miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 3' -58.7 NC_006151.1 + 104264 0.66 0.815619
Target:  5'- -aGAACg---CCggCGCggcgGCGGGCCCGCc -3'
miRNA:   3'- gaCUUGagcaGGa-GCG----CGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 55156 0.66 0.815619
Target:  5'- gUGcGCUCGUaCCUCGaCGagaccgGGGCgCGCa -3'
miRNA:   3'- gACuUGAGCA-GGAGC-GCg-----UCCGgGCG- -5'
29404 3' -58.7 NC_006151.1 + 29962 0.66 0.815619
Target:  5'- -cGAGCUCGgaCCgcgGCGauggugaauGGGCCCGCg -3'
miRNA:   3'- gaCUUGAGCa-GGag-CGCg--------UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 121825 0.66 0.815619
Target:  5'- gCUGAugUgcCGcuaCCUCGCGCGgcGGCugCCGCu -3'
miRNA:   3'- -GACUugA--GCa--GGAGCGCGU--CCG--GGCG- -5'
29404 3' -58.7 NC_006151.1 + 68211 0.66 0.815619
Target:  5'- gUGGaaGCggcccugCG-CCagGCGCAGcGCCCGCg -3'
miRNA:   3'- gACU--UGa------GCaGGagCGCGUC-CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 111124 0.66 0.815619
Target:  5'- -gGAGCgcgCGUCUgugCGCGCc--CCCGCg -3'
miRNA:   3'- gaCUUGa--GCAGGa--GCGCGuccGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 115859 0.66 0.807031
Target:  5'- -aGAGCagGcUCUCGCGCAccCCCGCg -3'
miRNA:   3'- gaCUUGagCaGGAGCGCGUccGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 53638 0.66 0.807031
Target:  5'- uCUGcAGCUCGcgcaCCgUCG-GCGGGCUCGUg -3'
miRNA:   3'- -GAC-UUGAGCa---GG-AGCgCGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 117232 0.66 0.807031
Target:  5'- -cGAcGCgcgCGUCCacgUCG-GCGGGCCCGa -3'
miRNA:   3'- gaCU-UGa--GCAGG---AGCgCGUCCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 28556 0.66 0.807031
Target:  5'- -gGAGC-CGUgCC-CGCGUcccgGGaGCCCGCa -3'
miRNA:   3'- gaCUUGaGCA-GGaGCGCG----UC-CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 74594 0.66 0.807031
Target:  5'- gUGAACUCG-CCgaugaggCGcCGCAgGGCgUGCa -3'
miRNA:   3'- gACUUGAGCaGGa------GC-GCGU-CCGgGCG- -5'
29404 3' -58.7 NC_006151.1 + 75638 0.66 0.807031
Target:  5'- -cGGGCUUGcCgUCGuCGgGGGCCgGCu -3'
miRNA:   3'- gaCUUGAGCaGgAGC-GCgUCCGGgCG- -5'
29404 3' -58.7 NC_006151.1 + 107077 0.66 0.805295
Target:  5'- gUGGACUCGcagCUggcggugUCGCGCgugcucuGGGCgCCGCc -3'
miRNA:   3'- gACUUGAGCa--GG-------AGCGCG-------UCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 123510 0.66 0.79829
Target:  5'- -gGAGCUgGcgcgCUUCaUGguGGCCCGCg -3'
miRNA:   3'- gaCUUGAgCa---GGAGcGCguCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 88385 0.66 0.79829
Target:  5'- -cGAGCgCGUCCgcgGCGUccgcggccgcgAGGCCCGg -3'
miRNA:   3'- gaCUUGaGCAGGag-CGCG-----------UCCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 72365 0.66 0.79829
Target:  5'- -aGGGCagcgCGaCCUCGCGCAGcGUCgCGUg -3'
miRNA:   3'- gaCUUGa---GCaGGAGCGCGUC-CGG-GCG- -5'
29404 3' -58.7 NC_006151.1 + 57185 0.66 0.79829
Target:  5'- -aGAAgUCGgggUCguggCGCGaggcgaAGGCCCGCu -3'
miRNA:   3'- gaCUUgAGCa--GGa---GCGCg-----UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 19095 0.66 0.79829
Target:  5'- -aGGGCUCGUacaCGUaguacaGCAGGCaCCGCg -3'
miRNA:   3'- gaCUUGAGCAggaGCG------CGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 38555 0.66 0.792976
Target:  5'- -cGAGCggcgcaagaagaagCG-CCgCGCGCccgGGGCCCGCc -3'
miRNA:   3'- gaCUUGa-------------GCaGGaGCGCG---UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 121897 0.66 0.789405
Target:  5'- cCUGGcGCUCG-CgUaCGCGCGGGCcgagggggaCCGCg -3'
miRNA:   3'- -GACU-UGAGCaGgA-GCGCGUCCG---------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.