miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 5' -54 NC_006151.1 + 54825 0.66 0.958879
Target:  5'- cGCGCGAcGCGcucaCGggcGAGCGCGGGg-- -3'
miRNA:   3'- -CGCGCU-CGCa---GCac-UUCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 42327 0.66 0.958879
Target:  5'- cGCGCGAagcuGCGacgggaGUGGAGCGgAGGg-- -3'
miRNA:   3'- -CGCGCU----CGCag----CACUUCGUgUCCaac -5'
29404 5' -54 NC_006151.1 + 69326 0.66 0.958879
Target:  5'- uGCGCGGGCG-CGUcGccgcccgcGAGCGCGGcGUa- -3'
miRNA:   3'- -CGCGCUCGCaGCA-C--------UUCGUGUC-CAac -5'
29404 5' -54 NC_006151.1 + 14979 0.66 0.958879
Target:  5'- aGCGCGGGCGcuacgUCGUcGAgcaccccgAGUACGGGc-- -3'
miRNA:   3'- -CGCGCUCGC-----AGCA-CU--------UCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 5243 0.66 0.958879
Target:  5'- cGCGCG-GCGgCGgcgGggGCcCGGGggGc -3'
miRNA:   3'- -CGCGCuCGCaGCa--CuuCGuGUCCaaC- -5'
29404 5' -54 NC_006151.1 + 70896 0.66 0.958879
Target:  5'- cGCGCGcuGCGUCGUGcgcugccuGGCGCGcGUg- -3'
miRNA:   3'- -CGCGCu-CGCAGCACu-------UCGUGUcCAac -5'
29404 5' -54 NC_006151.1 + 106766 0.66 0.955056
Target:  5'- aGCGCGAcGCG-CGUGA-GCGCcuGGa-- -3'
miRNA:   3'- -CGCGCU-CGCaGCACUuCGUGu-CCaac -5'
29404 5' -54 NC_006151.1 + 55376 0.66 0.955056
Target:  5'- uGCGCGAGCG-CGagcagGAGGUGCGGc--- -3'
miRNA:   3'- -CGCGCUCGCaGCa----CUUCGUGUCcaac -5'
29404 5' -54 NC_006151.1 + 127927 0.66 0.955056
Target:  5'- aGCGgGGGCGgCGaGAcgGGCACGGGc-- -3'
miRNA:   3'- -CGCgCUCGCaGCaCU--UCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 62064 0.66 0.953864
Target:  5'- cGCGCGcGcCGUCGUGAcgaacgucguccucGGCGC-GGUc- -3'
miRNA:   3'- -CGCGCuC-GCAGCACU--------------UCGUGuCCAac -5'
29404 5' -54 NC_006151.1 + 80844 0.66 0.950999
Target:  5'- gGCGCGAgccGCGUCGacgUGAAcGacaGCAGGUc- -3'
miRNA:   3'- -CGCGCU---CGCAGC---ACUU-Cg--UGUCCAac -5'
29404 5' -54 NC_006151.1 + 129501 0.66 0.950999
Target:  5'- aGCGCGGGCG-CGaUGAcgAGCcgcuugccgccgACGGGggGg -3'
miRNA:   3'- -CGCGCUCGCaGC-ACU--UCG------------UGUCCaaC- -5'
29404 5' -54 NC_006151.1 + 21585 0.66 0.950999
Target:  5'- cGCGCGGG-GUCGaUGgcGUACGGcGUg- -3'
miRNA:   3'- -CGCGCUCgCAGC-ACuuCGUGUC-CAac -5'
29404 5' -54 NC_006151.1 + 130523 0.66 0.950159
Target:  5'- gGCGCGGGCGUCGcGuacacgcccccGCGCgAGGgcGg -3'
miRNA:   3'- -CGCGCUCGCAGCaCuu---------CGUG-UCCaaC- -5'
29404 5' -54 NC_006151.1 + 75393 0.66 0.946704
Target:  5'- gGCGCgGGGCGg-GUGcguGCGCGGGUc- -3'
miRNA:   3'- -CGCG-CUCGCagCACuu-CGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 117237 0.66 0.942167
Target:  5'- cGCGCGuccaCGUCGgcgggcccGAGGCGCGGGc-- -3'
miRNA:   3'- -CGCGCuc--GCAGCa-------CUUCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 82722 0.66 0.942167
Target:  5'- cCGCGAGgGUCaG-GAGGCGCAGcGg-- -3'
miRNA:   3'- cGCGCUCgCAG-CaCUUCGUGUC-Caac -5'
29404 5' -54 NC_006151.1 + 59179 0.66 0.942167
Target:  5'- aGCGCG-GCGaucUCGgccuuGCGCAGGUUc -3'
miRNA:   3'- -CGCGCuCGC---AGCacuu-CGUGUCCAAc -5'
29404 5' -54 NC_006151.1 + 30611 0.66 0.942167
Target:  5'- aCGCGGGCGgucggCGUGcgcgcuGUGCGGGUg- -3'
miRNA:   3'- cGCGCUCGCa----GCACuu----CGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 24463 0.67 0.937388
Target:  5'- cGCGCGAGCaccUCG-GggGCGuuGGUc- -3'
miRNA:   3'- -CGCGCUCGc--AGCaCuuCGUguCCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.