miRNA display CGI


Results 1 - 20 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29406 3' -65.1 NC_006151.1 + 62063 0.66 0.542333
Target:  5'- aCGCGCGcGCCgUCGugacgaaCGUCGUcCUCGGCg -3'
miRNA:   3'- -GCGUGC-CGG-GGCc------GCAGCGcGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 96190 0.66 0.542333
Target:  5'- aGCACGaGCgCCauggGGCGcCGCGUcgccguggCGGCg -3'
miRNA:   3'- gCGUGC-CG-GGg---CCGCaGCGCGa-------GCCG- -5'
29406 3' -65.1 NC_006151.1 + 6162 0.66 0.542333
Target:  5'- gGCcuCGGCCUCGGCG--GCGUcgUCGGa -3'
miRNA:   3'- gCGu-GCCGGGGCCGCagCGCG--AGCCg -5'
29406 3' -65.1 NC_006151.1 + 47255 0.66 0.542333
Target:  5'- gGCugGcgagauggaccGCUCCGGCG-CGCaGCguccgCGGCu -3'
miRNA:   3'- gCGugC-----------CGGGGCCGCaGCG-CGa----GCCG- -5'
29406 3' -65.1 NC_006151.1 + 64373 0.66 0.542333
Target:  5'- gCGCACGGUCgaGGcCGUgGCcaGCccgCGGCg -3'
miRNA:   3'- -GCGUGCCGGggCC-GCAgCG--CGa--GCCG- -5'
29406 3' -65.1 NC_006151.1 + 100483 0.66 0.542333
Target:  5'- gCGCugGGCCUgcaGGCGccCGUGUUcCGGa -3'
miRNA:   3'- -GCGugCCGGGg--CCGCa-GCGCGA-GCCg -5'
29406 3' -65.1 NC_006151.1 + 115200 0.66 0.542333
Target:  5'- aGCGC-GCCgCgGGCGcgCGCGCgaucgUGGCc -3'
miRNA:   3'- gCGUGcCGG-GgCCGCa-GCGCGa----GCCG- -5'
29406 3' -65.1 NC_006151.1 + 118174 0.66 0.542333
Target:  5'- uGCGCGGCCugaccgucgaggCCGGCuUCGCcggGCacgUGGCc -3'
miRNA:   3'- gCGUGCCGG------------GGCCGcAGCG---CGa--GCCG- -5'
29406 3' -65.1 NC_006151.1 + 141384 0.66 0.542333
Target:  5'- gGCG-GGCCCCGggcaaacaGCGgCGUGUcCGGCg -3'
miRNA:   3'- gCGUgCCGGGGC--------CGCaGCGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 23919 0.66 0.542333
Target:  5'- gGCccgACgGGCCgCCGGuCGUCGUGgaCGGg -3'
miRNA:   3'- gCG---UG-CCGG-GGCC-GCAGCGCgaGCCg -5'
29406 3' -65.1 NC_006151.1 + 64673 0.66 0.542333
Target:  5'- gCGCGCGGCCagcuccucaGGCaG-CGaGUUCGGCa -3'
miRNA:   3'- -GCGUGCCGGgg-------CCG-CaGCgCGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 112718 0.66 0.542333
Target:  5'- uGCGCcaaGGCCCUGGCcugcccccCGUGCgccaCGGCc -3'
miRNA:   3'- gCGUG---CCGGGGCCGca------GCGCGa---GCCG- -5'
29406 3' -65.1 NC_006151.1 + 122495 0.66 0.542333
Target:  5'- gGCgagACGGCgCgCCGGCG-CGCGgaCGcGCu -3'
miRNA:   3'- gCG---UGCCG-G-GGCCGCaGCGCgaGC-CG- -5'
29406 3' -65.1 NC_006151.1 + 79094 0.66 0.541403
Target:  5'- gCGCGCGagcgagcGCCCCucCGUCGUgGCUgGGCc -3'
miRNA:   3'- -GCGUGC-------CGGGGccGCAGCG-CGAgCCG- -5'
29406 3' -65.1 NC_006151.1 + 102512 0.66 0.541403
Target:  5'- gGCGCGGgaCCCCGGCGgCGUcuacgaccagacgGUggUGGCg -3'
miRNA:   3'- gCGUGCC--GGGGCCGCaGCG-------------CGa-GCCG- -5'
29406 3' -65.1 NC_006151.1 + 97247 0.66 0.535832
Target:  5'- gGCGCGGCCgcgcaugUCGGgGgcccacacgggcaGCGCcUCGGCg -3'
miRNA:   3'- gCGUGCCGG-------GGCCgCag-----------CGCG-AGCCG- -5'
29406 3' -65.1 NC_006151.1 + 98123 0.66 0.533054
Target:  5'- gCGCGCGccgaGCCCaCGGUuagUGUGCcCGGCg -3'
miRNA:   3'- -GCGUGC----CGGG-GCCGca-GCGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 91095 0.66 0.533054
Target:  5'- gCGCGaaggucguccCGGCCgCGGCGcccuUCGCcacggcggcgaGCUUGGCc -3'
miRNA:   3'- -GCGU----------GCCGGgGCCGC----AGCG-----------CGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 54986 0.66 0.533054
Target:  5'- -aCACGGCgCCGGUGaagGUGCUCgucgGGCg -3'
miRNA:   3'- gcGUGCCGgGGCCGCag-CGCGAG----CCG- -5'
29406 3' -65.1 NC_006151.1 + 21504 0.66 0.533054
Target:  5'- gGCGCGGgCgucaCCGGgG-CGgGCUCGGg -3'
miRNA:   3'- gCGUGCCgG----GGCCgCaGCgCGAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.