miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29406 5' -53.5 NC_006151.1 + 123154 0.65 0.976067
Target:  5'- cGGCGCGAgcugGAgaagacccugcgcgUGaACGUguacGGcGACGCGCu -3'
miRNA:   3'- cCCGCGCUa---CU--------------AC-UGCA----UC-CUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 4085 0.66 0.974268
Target:  5'- cGGCGCcacGGUGcgGGCGacgAGGGCGacagagucCGCg -3'
miRNA:   3'- cCCGCG---CUACuaCUGCa--UCCUGU--------GCG- -5'
29406 5' -53.5 NC_006151.1 + 26285 0.66 0.974268
Target:  5'- gGGGCG-GAcGGUGGgGUGGGGgGgGUg -3'
miRNA:   3'- -CCCGCgCUaCUACUgCAUCCUgUgCG- -5'
29406 5' -53.5 NC_006151.1 + 75338 0.66 0.974268
Target:  5'- uGGCGUGcucgaaGGUcACGUggcAGGGCACGCc -3'
miRNA:   3'- cCCGCGCua----CUAcUGCA---UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 96872 0.66 0.974268
Target:  5'- cGGGCGCGgcGc--GCGcgGGGGCAUGa -3'
miRNA:   3'- -CCCGCGCuaCuacUGCa-UCCUGUGCg -5'
29406 5' -53.5 NC_006151.1 + 105792 0.66 0.974268
Target:  5'- cGGuGCGCGAggcgcgGAgcGACGc-GGACGCGg -3'
miRNA:   3'- -CC-CGCGCUa-----CUa-CUGCauCCUGUGCg -5'
29406 5' -53.5 NC_006151.1 + 117680 0.66 0.974268
Target:  5'- cGGCGCGAUGAacuUGAacuCGcucAGG-CGCGUc -3'
miRNA:   3'- cCCGCGCUACU---ACU---GCa--UCCuGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 123910 0.66 0.974268
Target:  5'- cGGCGCGgcGGccgUGACGc-GGGC-CGCc -3'
miRNA:   3'- cCCGCGCuaCU---ACUGCauCCUGuGCG- -5'
29406 5' -53.5 NC_006151.1 + 103644 0.66 0.974268
Target:  5'- cGGCGCug-GcgGACGc-GGACACGg -3'
miRNA:   3'- cCCGCGcuaCuaCUGCauCCUGUGCg -5'
29406 5' -53.5 NC_006151.1 + 135738 0.66 0.974268
Target:  5'- cGGGgGCGGUcuacgucgucucGuacGCGUGGGACgGCGCc -3'
miRNA:   3'- -CCCgCGCUA------------CuacUGCAUCCUG-UGCG- -5'
29406 5' -53.5 NC_006151.1 + 69140 0.66 0.97265
Target:  5'- aGGGCGCGcgGGUGcucgacgcCGUGccgcucgcacuccucGGcgaGCACGCg -3'
miRNA:   3'- -CCCGCGCuaCUACu-------GCAU---------------CC---UGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 104567 0.66 0.97153
Target:  5'- uGGGCGCGcgGcgcgcgGACGUGcuGCAgGCc -3'
miRNA:   3'- -CCCGCGCuaCua----CUGCAUccUGUgCG- -5'
29406 5' -53.5 NC_006151.1 + 76631 0.66 0.971245
Target:  5'- cGGGCgcuccaucgugugGCGAcGAccGCGUGcGGGCGCGUg -3'
miRNA:   3'- -CCCG-------------CGCUaCUacUGCAU-CCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 21502 0.66 0.968589
Target:  5'- gGGGCGCG-----GGCGUcaccGGGGCGgGCu -3'
miRNA:   3'- -CCCGCGCuacuaCUGCA----UCCUGUgCG- -5'
29406 5' -53.5 NC_006151.1 + 43381 0.66 0.968589
Target:  5'- cGGGgGCGGUGGUGGCcgucgcucGUGGccGGCAaagaUGCg -3'
miRNA:   3'- -CCCgCGCUACUACUG--------CAUC--CUGU----GCG- -5'
29406 5' -53.5 NC_006151.1 + 120227 0.66 0.968589
Target:  5'- cGGcGCGCGAccacGACG-GGGACcugGCGCg -3'
miRNA:   3'- -CC-CGCGCUacuaCUGCaUCCUG---UGCG- -5'
29406 5' -53.5 NC_006151.1 + 122663 0.66 0.968589
Target:  5'- cGGCGCGAgcgccGCGccgAGGuGCGCGCg -3'
miRNA:   3'- cCCGCGCUacuacUGCa--UCC-UGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 124876 0.66 0.968589
Target:  5'- uGGCGCGAggccgaggaGAUGACccgcgacGaGACGCGCg -3'
miRNA:   3'- cCCGCGCUa--------CUACUGcau----C-CUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 130882 0.66 0.968589
Target:  5'- uGGGCggcgGCGGUGGaGGCGgcGGcCGuCGCc -3'
miRNA:   3'- -CCCG----CGCUACUaCUGCauCCuGU-GCG- -5'
29406 5' -53.5 NC_006151.1 + 12422 0.66 0.968589
Target:  5'- uGGGUGgGGUGA-GGCG-AGuGAC-CGCc -3'
miRNA:   3'- -CCCGCgCUACUaCUGCaUC-CUGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.