miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29407 5' -62.3 NC_006151.1 + 129012 0.66 0.629475
Target:  5'- aUGCCCuucAGCGCgGCGucGGCCg- -3'
miRNA:   3'- aGCGGGcacUCGCGgCGCuuCCGGag -5'
29407 5' -62.3 NC_006151.1 + 11026 0.66 0.629475
Target:  5'- cUCGCUCGccGGGCcgGCCGgcCGggGGCC-Cg -3'
miRNA:   3'- -AGCGGGCa-CUCG--CGGC--GCuuCCGGaG- -5'
29407 5' -62.3 NC_006151.1 + 68039 0.66 0.629475
Target:  5'- -gGCCCGccGGCGCgGCGGGcacGGgCUCg -3'
miRNA:   3'- agCGGGCacUCGCGgCGCUU---CCgGAG- -5'
29407 5' -62.3 NC_006151.1 + 5024 0.66 0.629475
Target:  5'- -gGCuCCG-GGGCcgggGCCGgGGAGGCCg- -3'
miRNA:   3'- agCG-GGCaCUCG----CGGCgCUUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 3847 0.66 0.629475
Target:  5'- -gGCCCGga---GCCGgGGAGGCCg- -3'
miRNA:   3'- agCGGGCacucgCGGCgCUUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 58723 0.66 0.623549
Target:  5'- gCGCCCccGUGccgcucgcgucgcgcAGCGCCGCGGccaccgcGGCCg- -3'
miRNA:   3'- aGCGGG--CAC---------------UCGCGGCGCUu------CCGGag -5'
29407 5' -62.3 NC_006151.1 + 66580 0.66 0.6196
Target:  5'- gCGCUCGcGcGCGCgGCcGAGGCgCUCg -3'
miRNA:   3'- aGCGGGCaCuCGCGgCGcUUCCG-GAG- -5'
29407 5' -62.3 NC_006151.1 + 55901 0.66 0.6196
Target:  5'- gCGCCgGgcgaccGAGCGgcuCCGCGAuggAGGCCg- -3'
miRNA:   3'- aGCGGgCa-----CUCGC---GGCGCU---UCCGGag -5'
29407 5' -62.3 NC_006151.1 + 39530 0.66 0.6196
Target:  5'- -gGCCCGgccugcuuCGCCcgcGUGGAGGCCUCc -3'
miRNA:   3'- agCGGGCacuc----GCGG---CGCUUCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 2692 0.66 0.6196
Target:  5'- cUCGgcCCCG-GGGUGCaggcggGCGAaggAGGCCUCc -3'
miRNA:   3'- -AGC--GGGCaCUCGCGg-----CGCU---UCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 2531 0.66 0.6196
Target:  5'- -aGCCCGagcgcgGAGCGCUG-GcGGGCCa- -3'
miRNA:   3'- agCGGGCa-----CUCGCGGCgCuUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 92573 0.66 0.6196
Target:  5'- gUCGCUg--GAGgGCCGCGAGguGGCCc- -3'
miRNA:   3'- -AGCGGgcaCUCgCGGCGCUU--CCGGag -5'
29407 5' -62.3 NC_006151.1 + 15915 0.66 0.6196
Target:  5'- -gGCCCGccgccGCcCCGUGAggcGGGCCUCg -3'
miRNA:   3'- agCGGGCacu--CGcGGCGCU---UCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 33284 0.66 0.6196
Target:  5'- aUCGCCCGacccuuccccgGGGCGCgCGCGcguGGGaCCg- -3'
miRNA:   3'- -AGCGGGCa----------CUCGCG-GCGCu--UCC-GGag -5'
29407 5' -62.3 NC_006151.1 + 35855 0.66 0.6196
Target:  5'- cCGCCCGcucuccGCGCUcgGCGcccGGCCUCg -3'
miRNA:   3'- aGCGGGCacu---CGCGG--CGCuu-CCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 55068 0.66 0.6196
Target:  5'- -gGaCCCGgcGGGCucgGCCGCGgcGcGCCUCg -3'
miRNA:   3'- agC-GGGCa-CUCG---CGGCGCuuC-CGGAG- -5'
29407 5' -62.3 NC_006151.1 + 88317 0.66 0.6196
Target:  5'- -gGCCuCGgagaAGCGCUGCGA-GGCCa- -3'
miRNA:   3'- agCGG-GCac--UCGCGGCGCUuCCGGag -5'
29407 5' -62.3 NC_006151.1 + 129741 0.66 0.6196
Target:  5'- -gGCCCGcGAgGCGCugcagcaccagCGCGAAGGCgaCg -3'
miRNA:   3'- agCGGGCaCU-CGCG-----------GCGCUUCCGgaG- -5'
29407 5' -62.3 NC_006151.1 + 71068 0.66 0.613679
Target:  5'- cCGgCCGUGgucuucuaccaccacGGCGCCGCGGgcgcGGGCg-- -3'
miRNA:   3'- aGCgGGCAC---------------UCGCGGCGCU----UCCGgag -5'
29407 5' -62.3 NC_006151.1 + 96641 0.66 0.609734
Target:  5'- gCGCCUc-GAGCucgGCgGCGAGGGCC-Cg -3'
miRNA:   3'- aGCGGGcaCUCG---CGgCGCUUCCGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.