miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 5' -57.8 NC_006151.1 + 54289 0.66 0.812287
Target:  5'- -gGUGCgcuccaccgaGGCCgcCGUGCGGCAgauccaguccacgcuGCUCa -3'
miRNA:   3'- agCACGa---------CCGGauGCACGUCGU---------------CGAG- -5'
29409 5' -57.8 NC_006151.1 + 104275 0.66 0.799795
Target:  5'- gCGgcgGCgGGCCcgccgcugcagGCGcUGCAGCGGCUg -3'
miRNA:   3'- aGCa--CGaCCGGa----------UGC-ACGUCGUCGAg -5'
29409 5' -57.8 NC_006151.1 + 54705 0.66 0.789766
Target:  5'- gCGUGCUgggccagGGCCUggACGagGUGGCcgAGCUCg -3'
miRNA:   3'- aGCACGA-------CCGGA--UGCa-CGUCG--UCGAG- -5'
29409 5' -57.8 NC_006151.1 + 50666 0.66 0.781431
Target:  5'- gUCGUGCgcGGCCgcacccccGCGccgccGCGGCAGCg- -3'
miRNA:   3'- -AGCACGa-CCGGa-------UGCa----CGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 120105 0.66 0.77204
Target:  5'- -gGUGCUGcGCCgccGCGUGguGgAcauGCUCa -3'
miRNA:   3'- agCACGAC-CGGa--UGCACguCgU---CGAG- -5'
29409 5' -57.8 NC_006151.1 + 91597 0.66 0.77204
Target:  5'- cUCGUcGCUGagcaccagcauGCCggUGCGcUGCAGgGGCUCg -3'
miRNA:   3'- -AGCA-CGAC-----------CGG--AUGC-ACGUCgUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 104648 0.66 0.762522
Target:  5'- aCGUGCgcgcGGCCgccgACGcgGCGcGCGcGCUCg -3'
miRNA:   3'- aGCACGa---CCGGa---UGCa-CGU-CGU-CGAG- -5'
29409 5' -57.8 NC_006151.1 + 3792 0.66 0.762522
Target:  5'- -gGUGCUGGagcuggaCUugGUGCuGgAGCUg -3'
miRNA:   3'- agCACGACCg------GAugCACGuCgUCGAg -5'
29409 5' -57.8 NC_006151.1 + 105082 0.67 0.752887
Target:  5'- aCGUGCaGGCCgucgagugGC-UGCAccaggcGCGGCUCa -3'
miRNA:   3'- aGCACGaCCGGa-------UGcACGU------CGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 2588 0.67 0.752887
Target:  5'- aCGcGCUGGCgguagGCGcGCGGCGGCa- -3'
miRNA:   3'- aGCaCGACCGga---UGCaCGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 114112 0.67 0.751917
Target:  5'- cUCGgcgGCUGcuGCCccACGUGCGccgccgccgagccGCGGCUCg -3'
miRNA:   3'- -AGCa--CGAC--CGGa-UGCACGU-------------CGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 121681 0.67 0.750946
Target:  5'- gCGaGCgGGCCgacccggccaugGCGgaGCGGCGGCUCg -3'
miRNA:   3'- aGCaCGaCCGGa-----------UGCa-CGUCGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 104411 0.67 0.733301
Target:  5'- gCGUGCUGGCCcGCGccGCcGcCGGCa- -3'
miRNA:   3'- aGCACGACCGGaUGCa-CGuC-GUCGag -5'
29409 5' -57.8 NC_006151.1 + 49261 0.67 0.723369
Target:  5'- cUCGUGC-GcGCCguCGUcCAGCGGCUCu -3'
miRNA:   3'- -AGCACGaC-CGGauGCAcGUCGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 103539 0.67 0.723369
Target:  5'- gCGcGCUGGUggGCGccggGCAGCcGCUCg -3'
miRNA:   3'- aGCaCGACCGgaUGCa---CGUCGuCGAG- -5'
29409 5' -57.8 NC_006151.1 + 72719 0.67 0.713358
Target:  5'- -aGUGCUccucGGCCccgagggGCGUccGCAGCAGCg- -3'
miRNA:   3'- agCACGA----CCGGa------UGCA--CGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 72095 0.67 0.713358
Target:  5'- ---cGCgGGCCUggGCGaGCGGCAGCgUCa -3'
miRNA:   3'- agcaCGaCCGGA--UGCaCGUCGUCG-AG- -5'
29409 5' -57.8 NC_006151.1 + 85127 0.67 0.710341
Target:  5'- cCGcGCUGuGCCUgcaccuggugcaccGCGUGCGGCAGg-- -3'
miRNA:   3'- aGCaCGAC-CGGA--------------UGCACGUCGUCgag -5'
29409 5' -57.8 NC_006151.1 + 95921 0.67 0.703277
Target:  5'- gCGUGCagucGCCcgaggGCGUGCGGUugaAGCUCu -3'
miRNA:   3'- aGCACGac--CGGa----UGCACGUCG---UCGAG- -5'
29409 5' -57.8 NC_006151.1 + 60017 0.67 0.703277
Target:  5'- gUCGUugacGCUcGUCaGCGUGCAGC-GCUCg -3'
miRNA:   3'- -AGCA----CGAcCGGaUGCACGUCGuCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.