miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 3' -53.7 NC_006151.1 + 94723 0.66 0.956268
Target:  5'- ---cCAGCcgCGCCacGGCGUCccGGCGCg -3'
miRNA:   3'- cuucGUCGa-GUGG--CUGUAGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 3088 0.66 0.956268
Target:  5'- aAGGCGGCgagcagCGCCGAgAggccgcCGcGGCGCg -3'
miRNA:   3'- cUUCGUCGa-----GUGGCUgUa-----GUaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 16956 0.66 0.956268
Target:  5'- --uGCAGggccucguccaCUCGCCGGC---GUGGCGCc -3'
miRNA:   3'- cuuCGUC-----------GAGUGGCUGuagUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 82064 0.66 0.956268
Target:  5'- uAGGCGGC-CACguCGcGCAUCGucUGGUGCa -3'
miRNA:   3'- cUUCGUCGaGUG--GC-UGUAGU--ACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 38828 0.66 0.956268
Target:  5'- -cGGCGGCUucCGCCG-CGUCccGGCcgGCg -3'
miRNA:   3'- cuUCGUCGA--GUGGCuGUAGuaCCG--CG- -5'
29410 3' -53.7 NC_006151.1 + 44691 0.66 0.956268
Target:  5'- -cGGCGGCUgACCGuacCAUCugcugcccAUGGUGUc -3'
miRNA:   3'- cuUCGUCGAgUGGCu--GUAG--------UACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 59837 0.66 0.956268
Target:  5'- -cGGCcGC-CACCGGCcgGUCcggggGGCGCa -3'
miRNA:   3'- cuUCGuCGaGUGGCUG--UAGua---CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 67694 0.66 0.956268
Target:  5'- --cGCAGCUC-CCGcuuguCcgCcUGGCGCc -3'
miRNA:   3'- cuuCGUCGAGuGGCu----GuaGuACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 75120 0.66 0.956268
Target:  5'- -cAGCAGCUgGUCGGCGgccggcGGCGCg -3'
miRNA:   3'- cuUCGUCGAgUGGCUGUagua--CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 75277 0.66 0.956268
Target:  5'- uGgcGCAGC--GCCGcCAgCGUGGCGUc -3'
miRNA:   3'- -CuuCGUCGagUGGCuGUaGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 133661 0.66 0.956268
Target:  5'- aGAGGC-GCU-GCCGGCG-CGgcGGCGCg -3'
miRNA:   3'- -CUUCGuCGAgUGGCUGUaGUa-CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 94243 0.66 0.956268
Target:  5'- cGAGCucgGGCUCGCUGAgcgcggccaCGUCcuUGGCGUc -3'
miRNA:   3'- cUUCG---UCGAGUGGCU---------GUAGu-ACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 89651 0.66 0.956268
Target:  5'- ---aCGGC-CACCGAgAg-GUGGCGCg -3'
miRNA:   3'- cuucGUCGaGUGGCUgUagUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 2033 0.66 0.956268
Target:  5'- cGGAGCAGCagguaggggUUGCCGGCGUCcucGGCc- -3'
miRNA:   3'- -CUUCGUCG---------AGUGGCUGUAGua-CCGcg -5'
29410 3' -53.7 NC_006151.1 + 127826 0.66 0.956268
Target:  5'- --uGCGGUUCACguacguggCGGCGUCGcGGCuGCg -3'
miRNA:   3'- cuuCGUCGAGUG--------GCUGUAGUaCCG-CG- -5'
29410 3' -53.7 NC_006151.1 + 75654 0.66 0.956268
Target:  5'- gGggGcCGGCUCGCCGcCGagCAgguaGCGCg -3'
miRNA:   3'- -CuuC-GUCGAGUGGCuGUa-GUac--CGCG- -5'
29410 3' -53.7 NC_006151.1 + 106209 0.66 0.952233
Target:  5'- --uGCGGCUCGCCcuccccGACcugAUgGUGGcCGCg -3'
miRNA:   3'- cuuCGUCGAGUGG------CUG---UAgUACC-GCG- -5'
29410 3' -53.7 NC_006151.1 + 20331 0.66 0.952233
Target:  5'- cGAGCAGgaCGCgCGACA-CGacgcUGGCGUu -3'
miRNA:   3'- cUUCGUCgaGUG-GCUGUaGU----ACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 97572 0.66 0.952233
Target:  5'- aGgcGCAGCUCGCgGuccacgucCAUCAgcGCGCa -3'
miRNA:   3'- -CuuCGUCGAGUGgCu-------GUAGUacCGCG- -5'
29410 3' -53.7 NC_006151.1 + 50444 0.66 0.952233
Target:  5'- -cGGCGGCcugggCACCGcCcgCG-GGCGCu -3'
miRNA:   3'- cuUCGUCGa----GUGGCuGuaGUaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.