miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 5' -62.1 NC_006151.1 + 130122 0.66 0.663806
Target:  5'- cCGgGUUCugGCCgUgGGCGCGCg-- -3'
miRNA:   3'- cGCaCAGGugCGGgGgCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 106503 0.66 0.663806
Target:  5'- aGCGgcuggCgCGCGCCgugCCgGGCGCGCUg- -3'
miRNA:   3'- -CGCaca--G-GUGCGG---GGgCCGCGCGAac -5'
29410 5' -62.1 NC_006151.1 + 118687 0.66 0.663806
Target:  5'- uUGUGUacCCGCGCCCCuucuucaaCGGCcCGCUc- -3'
miRNA:   3'- cGCACA--GGUGCGGGG--------GCCGcGCGAac -5'
29410 5' -62.1 NC_006151.1 + 31261 0.66 0.663806
Target:  5'- gGCGaGcCgGgGCCCCCGGCcCGCUc- -3'
miRNA:   3'- -CGCaCaGgUgCGGGGGCCGcGCGAac -5'
29410 5' -62.1 NC_006151.1 + 52487 0.66 0.663806
Target:  5'- cCGUGacggCCucggGCGCCagCCCGGgGCGCUg- -3'
miRNA:   3'- cGCACa---GG----UGCGG--GGGCCgCGCGAac -5'
29410 5' -62.1 NC_006151.1 + 85345 0.66 0.663806
Target:  5'- aGCGUG-CU-CGCCgCgCUGGCGCGCcUGc -3'
miRNA:   3'- -CGCACaGGuGCGG-G-GGCCGCGCGaAC- -5'
29410 5' -62.1 NC_006151.1 + 13423 0.66 0.663806
Target:  5'- cCGgGcCCGCGUCCCCGGgGCccGCaUUGg -3'
miRNA:   3'- cGCaCaGGUGCGGGGGCCgCG--CG-AAC- -5'
29410 5' -62.1 NC_006151.1 + 81522 0.66 0.663806
Target:  5'- cGCGUGagcUCgGCGgCCgcggCGGCGCGCUc- -3'
miRNA:   3'- -CGCAC---AGgUGCgGGg---GCCGCGCGAac -5'
29410 5' -62.1 NC_006151.1 + 121999 0.66 0.663806
Target:  5'- cGCGUGccgcuUCCACGCgCgCGuCGCGCUc- -3'
miRNA:   3'- -CGCAC-----AGGUGCGgGgGCcGCGCGAac -5'
29410 5' -62.1 NC_006151.1 + 64440 0.66 0.662827
Target:  5'- cGCGUGgCCGC-CUCCaccgucaggauggCGGCGCGCg-- -3'
miRNA:   3'- -CGCACaGGUGcGGGG-------------GCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 69100 0.66 0.662827
Target:  5'- gGCGUGccgccgcaccagcUCCcgccGCGCCUCCgcgggcagGGCGCGCg-- -3'
miRNA:   3'- -CGCAC-------------AGG----UGCGGGGG--------CCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 70898 0.66 0.654009
Target:  5'- cGCGcugcGUCgUGCGCUgCCUGGCGCGCg-- -3'
miRNA:   3'- -CGCa---CAG-GUGCGG-GGGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 77172 0.66 0.654009
Target:  5'- cGCGUccgccgccgcGUCCACGUCCgCCGcCGCGUc-- -3'
miRNA:   3'- -CGCA----------CAGGUGCGGG-GGCcGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 104163 0.66 0.654009
Target:  5'- cGCGgagCUGCGCCCcgccgCCGaGCGCGCg-- -3'
miRNA:   3'- -CGCacaGGUGCGGG-----GGC-CGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 60424 0.66 0.654009
Target:  5'- aGCG-GcCCACGUCCUCGGgGgGCc-- -3'
miRNA:   3'- -CGCaCaGGUGCGGGGGCCgCgCGaac -5'
29410 5' -62.1 NC_006151.1 + 101654 0.66 0.654009
Target:  5'- cCGUGcCCGCGCUCUaCGGCGUGg--- -3'
miRNA:   3'- cGCACaGGUGCGGGG-GCCGCGCgaac -5'
29410 5' -62.1 NC_006151.1 + 107980 0.66 0.654009
Target:  5'- --cUGcCCAgaaGCCCCCGGCGCaGCc-- -3'
miRNA:   3'- cgcACaGGUg--CGGGGGCCGCG-CGaac -5'
29410 5' -62.1 NC_006151.1 + 24566 0.66 0.644196
Target:  5'- cCGUGUCCACGUCCUCGaGgaagauguucucCGC-CUUGa -3'
miRNA:   3'- cGCACAGGUGCGGGGGC-C------------GCGcGAAC- -5'
29410 5' -62.1 NC_006151.1 + 92728 0.66 0.644196
Target:  5'- aCGUGguggCCAUGCUCacgCCGGCGCGg--- -3'
miRNA:   3'- cGCACa---GGUGCGGG---GGCCGCGCgaac -5'
29410 5' -62.1 NC_006151.1 + 63757 0.66 0.644196
Target:  5'- gGCGgggcGUCCucgGCGCCCCCG-CGuCGCc-- -3'
miRNA:   3'- -CGCa---CAGG---UGCGGGGGCcGC-GCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.