miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 2867 0.66 0.699871
Target:  5'- aCGGCCGgG-CCGUCcGCGGgCCaGUCc -3'
miRNA:   3'- -GCCGGCgUaGGUAGaCGUCgGGgCAG- -5'
29411 3' -60.7 NC_006151.1 + 133042 0.66 0.699871
Target:  5'- uGGCCGCcUCgAUCaggucCAGCCCC-UCg -3'
miRNA:   3'- gCCGGCGuAGgUAGac---GUCGGGGcAG- -5'
29411 3' -60.7 NC_006151.1 + 53412 0.66 0.696916
Target:  5'- aCGGCCGUGagCAggUGCcgcccgagcagcccGGCCUCGUCg -3'
miRNA:   3'- -GCCGGCGUagGUagACG--------------UCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 118908 0.66 0.694944
Target:  5'- gCGGCCucgagcgccgcaugGCGUCCGUCaugagcgccgacGCGGCgCUGUCg -3'
miRNA:   3'- -GCCGG--------------CGUAGGUAGa-----------CGUCGgGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 140049 0.66 0.690005
Target:  5'- gCGGCCGCAcgCCAcCgagGCGGCgCgCGUg -3'
miRNA:   3'- -GCCGGCGUa-GGUaGa--CGUCGgG-GCAg -5'
29411 3' -60.7 NC_006151.1 + 68164 0.66 0.690005
Target:  5'- aCGGCCGCcaCCAgcgCguagGCGGCgUCGUUg -3'
miRNA:   3'- -GCCGGCGuaGGUa--Ga---CGUCGgGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 115227 0.66 0.690005
Target:  5'- uGGCCGCugccgCCGaga-CGGCCUCGUCg -3'
miRNA:   3'- gCCGGCGua---GGUagacGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 133261 0.66 0.690005
Target:  5'- aCGGCCugucgcugaagGCGagCCGgcgGCGGCCCaCGUCg -3'
miRNA:   3'- -GCCGG-----------CGUa-GGUagaCGUCGGG-GCAG- -5'
29411 3' -60.7 NC_006151.1 + 139463 0.66 0.689016
Target:  5'- -cGCCGCccgCCAcCUGCacaccgcGGCCCCGcUCg -3'
miRNA:   3'- gcCGGCGua-GGUaGACG-------UCGGGGC-AG- -5'
29411 3' -60.7 NC_006151.1 + 58808 0.66 0.688027
Target:  5'- gCGcGCCGCGUacgcgc-CGGCCCCGUCg -3'
miRNA:   3'- -GC-CGGCGUAgguagacGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 58265 0.66 0.680094
Target:  5'- gGGCCGCAgcaCCGUCUcGC-GCa-CGUCa -3'
miRNA:   3'- gCCGGCGUa--GGUAGA-CGuCGggGCAG- -5'
29411 3' -60.7 NC_006151.1 + 70208 0.66 0.680094
Target:  5'- uGGCgauguggGCGUCCAUC-GCGGCgCCGcUCa -3'
miRNA:   3'- gCCGg------CGUAGGUAGaCGUCGgGGC-AG- -5'
29411 3' -60.7 NC_006151.1 + 57613 0.66 0.680094
Target:  5'- uCGGCCGCggCCGccUCgacgGCgcgcgAGaCCCCGUUg -3'
miRNA:   3'- -GCCGGCGuaGGU--AGa---CG-----UC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 69631 0.66 0.680094
Target:  5'- gCGGUCgGCGUCCcgCgcgUGCGGCgCCGcCg -3'
miRNA:   3'- -GCCGG-CGUAGGuaG---ACGUCGgGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 71333 0.66 0.680094
Target:  5'- gCGGCUGCG-CCGacgaccUCgccGUGGCCCuCGUCa -3'
miRNA:   3'- -GCCGGCGUaGGU------AGa--CGUCGGG-GCAG- -5'
29411 3' -60.7 NC_006151.1 + 74651 0.66 0.680094
Target:  5'- aCGGCgGCgcaGUCC-UCggGCAGCucCCCGUUg -3'
miRNA:   3'- -GCCGgCG---UAGGuAGa-CGUCG--GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 57247 0.66 0.670145
Target:  5'- gCGGCCucgGCGUCCG-C-GCGGCCCuCGa- -3'
miRNA:   3'- -GCCGG---CGUAGGUaGaCGUCGGG-GCag -5'
29411 3' -60.7 NC_006151.1 + 128422 0.66 0.670145
Target:  5'- aGGCCGCAcacgccgcucuUCCAgggcgUCU-CGGCCCaCGUg -3'
miRNA:   3'- gCCGGCGU-----------AGGU-----AGAcGUCGGG-GCAg -5'
29411 3' -60.7 NC_006151.1 + 120853 0.66 0.670145
Target:  5'- uGGCCacguacaCGUCCAgccacCUGCuccGCUCCGUCa -3'
miRNA:   3'- gCCGGc------GUAGGUa----GACGu--CGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 83338 0.66 0.670145
Target:  5'- aGGCgCGCGUCCAcgUGCu-CCCCGg- -3'
miRNA:   3'- gCCG-GCGUAGGUagACGucGGGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.