miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 5' -58.1 NC_006151.1 + 68875 0.65 0.815448
Target:  5'- -cGCCGGGGCGcgcccggccacgucGAGgacggccucgcgGUCgCGCGGGCGg -3'
miRNA:   3'- cuCGGCCUCGU--------------CUUa-----------CAG-GUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 130834 0.66 0.811093
Target:  5'- aGGCgCGGcGCGGAGUcGUCgccgucggcggCGCGGGCGg -3'
miRNA:   3'- cUCG-GCCuCGUCUUA-CAG-----------GUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 131724 0.66 0.811093
Target:  5'- uGAGgUGGuaGGCGGggUGgcgggCC-CGGGCGa -3'
miRNA:   3'- -CUCgGCC--UCGUCuuACa----GGuGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 68060 0.66 0.811093
Target:  5'- cGGGCuCGGcgacgGGCAG---GUCgGCGGGCAg -3'
miRNA:   3'- -CUCG-GCC-----UCGUCuuaCAGgUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 130265 0.66 0.80934
Target:  5'- aGGCCGGcgcGCGGccccgaggCCGCGGGCGc -3'
miRNA:   3'- cUCGGCCu--CGUCuuaca---GGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 3253 0.66 0.802263
Target:  5'- -cGgCGGAGCGGGGcG-CCGCGGcGCGc -3'
miRNA:   3'- cuCgGCCUCGUCUUaCaGGUGCC-CGU- -5'
29411 5' -58.1 NC_006151.1 + 129460 0.66 0.798687
Target:  5'- cGGCCGuGGGCGGGAcgagcccguccagGUCCucggagggcagcGCGGGCGc -3'
miRNA:   3'- cUCGGC-CUCGUCUUa------------CAGG------------UGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 79411 0.66 0.793278
Target:  5'- uGGgCGGAGCuauuGGAAacucgGUCaCAUGGGCAa -3'
miRNA:   3'- cUCgGCCUCG----UCUUa----CAG-GUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 139554 0.66 0.784149
Target:  5'- gGAGCgaGGAGCGGcgcccgGUCCGCGaGCGc -3'
miRNA:   3'- -CUCGg-CCUCGUCuua---CAGGUGCcCGU- -5'
29411 5' -58.1 NC_006151.1 + 69382 0.66 0.784149
Target:  5'- -cGCCGucAGCGGccggggGUCCugGGGCGu -3'
miRNA:   3'- cuCGGCc-UCGUCuua---CAGGugCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 18130 0.66 0.784149
Target:  5'- -cGCUGGGGUcGAacGUGUCCAUgucggcggGGGCGg -3'
miRNA:   3'- cuCGGCCUCGuCU--UACAGGUG--------CCCGU- -5'
29411 5' -58.1 NC_006151.1 + 127925 0.66 0.774884
Target:  5'- gGAGCgGGGGCggcgAGAcgGg-CACGGGCc -3'
miRNA:   3'- -CUCGgCCUCG----UCUuaCagGUGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 35493 0.66 0.774884
Target:  5'- uGGGCCGGgcaugcaaAGCAGAcgG-CagaggaaGCGGGCGa -3'
miRNA:   3'- -CUCGGCC--------UCGUCUuaCaGg------UGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 127290 0.66 0.772079
Target:  5'- cGGGUCGGGGgugcugguaCAGGccgucguccgcgcggGUCCGCGGGCGg -3'
miRNA:   3'- -CUCGGCCUC---------GUCUua-------------CAGGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 18751 0.66 0.765491
Target:  5'- -cGCCGGGGCcccacGGggUGcCCGgggccCGGGCc -3'
miRNA:   3'- cuCGGCCUCG-----UCuuACaGGU-----GCCCGu -5'
29411 5' -58.1 NC_006151.1 + 112994 0.66 0.765491
Target:  5'- cGAGCCuggGGGGCuGGAAggaccaCACGGGCGa -3'
miRNA:   3'- -CUCGG---CCUCG-UCUUacag--GUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 129709 0.66 0.765491
Target:  5'- -cGCCGagcaggcaguuGAGCAGcagGUUCGCGGGCc -3'
miRNA:   3'- cuCGGC-----------CUCGUCuuaCAGGUGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 90287 0.66 0.765491
Target:  5'- cGAGCUGGAggcccaugcacGCGGGGaugaaccgGUCCACgagGGGCAu -3'
miRNA:   3'- -CUCGGCCU-----------CGUCUUa-------CAGGUG---CCCGU- -5'
29411 5' -58.1 NC_006151.1 + 137522 0.66 0.764545
Target:  5'- -cGCCGGgcgacgaggacugGGCGGAcUGggaCGCGGGCGu -3'
miRNA:   3'- cuCGGCC-------------UCGUCUuACag-GUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 73833 0.67 0.755979
Target:  5'- uGGUCGGcGCAGGcaaagaggcGUUCACGGGCGc -3'
miRNA:   3'- cUCGGCCuCGUCUua-------CAGGUGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.