miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29412 3' -61.5 NC_006151.1 + 130268 0.66 0.695626
Target:  5'- cCGGCGcGCgGCcCCGaggccGCGGGCgCgCGCCGg -3'
miRNA:   3'- -GCCGC-UGaCGaGGU-----UGCCCG-G-GUGGC- -5'
29412 3' -61.5 NC_006151.1 + 95124 0.66 0.695626
Target:  5'- uGGCGGCguugagGCgccgcgCCGcCGGGUCgGCCa -3'
miRNA:   3'- gCCGCUGa-----CGa-----GGUuGCCCGGgUGGc -5'
29412 3' -61.5 NC_006151.1 + 3456 0.66 0.695626
Target:  5'- gGGCGcggGgUGCUCgGGCauGGGCCCgagcgggcGCCGg -3'
miRNA:   3'- gCCGC---UgACGAGgUUG--CCCGGG--------UGGC- -5'
29412 3' -61.5 NC_006151.1 + 41580 0.66 0.695626
Target:  5'- uCGGCGcGCcgaUGCgaUCC-GCGGaGCCCGCCc -3'
miRNA:   3'- -GCCGC-UG---ACG--AGGuUGCC-CGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 57158 0.66 0.695626
Target:  5'- gGGCGAggGCgucccCCGGCGcGGCCCAgaagUCGg -3'
miRNA:   3'- gCCGCUgaCGa----GGUUGC-CCGGGU----GGC- -5'
29412 3' -61.5 NC_006151.1 + 29974 0.66 0.695626
Target:  5'- gCGGCGAUgGUg--AAUGGGCCCGCgGc -3'
miRNA:   3'- -GCCGCUGaCGaggUUGCCCGGGUGgC- -5'
29412 3' -61.5 NC_006151.1 + 35747 0.66 0.695626
Target:  5'- cCGGCGGCUaucaGCcCuCGACGGacgcccgaCCCACCGa -3'
miRNA:   3'- -GCCGCUGA----CGaG-GUUGCCc-------GGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 115184 0.66 0.685908
Target:  5'- aGGgGGC-GCUCCAgccagcgcgccGCGGGCgCGCgCGc -3'
miRNA:   3'- gCCgCUGaCGAGGU-----------UGCCCGgGUG-GC- -5'
29412 3' -61.5 NC_006151.1 + 23868 0.66 0.685908
Target:  5'- cCGGUGGCguugGCgggggCgAGCGGGUUCACgGg -3'
miRNA:   3'- -GCCGCUGa---CGa----GgUUGCCCGGGUGgC- -5'
29412 3' -61.5 NC_006151.1 + 7026 0.66 0.685908
Target:  5'- gCGGCGGCcaucucgGCUcgcccgggCCAAUGGGCgCGCgGa -3'
miRNA:   3'- -GCCGCUGa------CGA--------GGUUGCCCGgGUGgC- -5'
29412 3' -61.5 NC_006151.1 + 30249 0.66 0.685908
Target:  5'- cCGGCGGgaGagaCGACGGGCgCCACa- -3'
miRNA:   3'- -GCCGCUgaCgagGUUGCCCG-GGUGgc -5'
29412 3' -61.5 NC_006151.1 + 61766 0.66 0.685908
Target:  5'- gCGGgGGCcguggUGCUgCGGCGcgaGGCCgGCCGg -3'
miRNA:   3'- -GCCgCUG-----ACGAgGUUGC---CCGGgUGGC- -5'
29412 3' -61.5 NC_006151.1 + 88483 0.66 0.685908
Target:  5'- aCGGUG-CUGUuggUCacgaaGGCGGcGUCCACCGg -3'
miRNA:   3'- -GCCGCuGACG---AGg----UUGCC-CGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 128528 0.66 0.685908
Target:  5'- cCGaGCccgagGC-CaCGGCGGGCCCGCCGg -3'
miRNA:   3'- -GC-CGcuga-CGaG-GUUGCCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 138605 0.66 0.685908
Target:  5'- gCGGCG-CUGCcgCuCGGCGaGGaCgCCGCCGg -3'
miRNA:   3'- -GCCGCuGACGa-G-GUUGC-CC-G-GGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 49923 0.66 0.685908
Target:  5'- cCGGCGGCUGacggacacgaUCCGcCGGGaCCUGgCCGc -3'
miRNA:   3'- -GCCGCUGACg---------AGGUuGCCC-GGGU-GGC- -5'
29412 3' -61.5 NC_006151.1 + 107542 0.66 0.685908
Target:  5'- cCGGCGGCcccgCCGGCGccgccGCCCGCCa -3'
miRNA:   3'- -GCCGCUGacgaGGUUGCc----CGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 29066 0.66 0.684934
Target:  5'- uGGCGGCg---CC-GCGGGCCCcgagacgGCCGc -3'
miRNA:   3'- gCCGCUGacgaGGuUGCCCGGG-------UGGC- -5'
29412 3' -61.5 NC_006151.1 + 115553 0.66 0.676149
Target:  5'- aCGGCGuACUcGC-CCGcggGCGGGCgCGCgGg -3'
miRNA:   3'- -GCCGC-UGA-CGaGGU---UGCCCGgGUGgC- -5'
29412 3' -61.5 NC_006151.1 + 91236 0.66 0.676149
Target:  5'- aGGCGAC-GCUCgGGgagcCGGGCCCcgucgcgaggacGCCc -3'
miRNA:   3'- gCCGCUGaCGAGgUU----GCCCGGG------------UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.