miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29412 5' -57.5 NC_006151.1 + 23712 0.66 0.823659
Target:  5'- gGGCAGCcguaguacucGCGGUggacgaggggcaccuUGCAGUGGCCG-CCg -3'
miRNA:   3'- -UCGUCGu---------CGUCG---------------AUGUCGUCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 3743 0.66 0.820201
Target:  5'- cGGCGGCGGgggAGCUGgcGUAGCCGgaggagCCg -3'
miRNA:   3'- -UCGUCGUCg--UCGAUguCGUCGGCa-----GG- -5'
29412 5' -57.5 NC_006151.1 + 4169 0.66 0.820201
Target:  5'- gAGC-GCgAGCAGC----GCGGCCGUCa -3'
miRNA:   3'- -UCGuCG-UCGUCGauguCGUCGGCAGg -5'
29412 5' -57.5 NC_006151.1 + 20784 0.66 0.820201
Target:  5'- gGGCgAGCGGCucgcGCUugcGCAGaCAGCCGcggaaggCCu -3'
miRNA:   3'- -UCG-UCGUCGu---CGA---UGUC-GUCGGCa------GG- -5'
29412 5' -57.5 NC_006151.1 + 21970 0.66 0.820201
Target:  5'- cGGCGuGguGCGGCgcCGGCAG-CGcCCa -3'
miRNA:   3'- -UCGU-CguCGUCGauGUCGUCgGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 133795 0.66 0.820201
Target:  5'- gGGaGGCGuGCAGCaucCGGguGCaCGUCCg -3'
miRNA:   3'- -UCgUCGU-CGUCGau-GUCguCG-GCAGG- -5'
29412 5' -57.5 NC_006151.1 + 51401 0.66 0.820201
Target:  5'- gGGCgAGCGcgucGCAGC-GCGuGCAcCCGUCCg -3'
miRNA:   3'- -UCG-UCGU----CGUCGaUGU-CGUcGGCAGG- -5'
29412 5' -57.5 NC_006151.1 + 68265 0.66 0.820201
Target:  5'- cGCGGCGaCGGUcGCGGC-GCCGggcgCCa -3'
miRNA:   3'- uCGUCGUcGUCGaUGUCGuCGGCa---GG- -5'
29412 5' -57.5 NC_006151.1 + 71322 0.66 0.814962
Target:  5'- cGGCAagcGCGGCGGCUGCGccgacgaccucGCcguggcccucgucauGGCCGUgCa -3'
miRNA:   3'- -UCGU---CGUCGUCGAUGU-----------CG---------------UCGGCAgG- -5'
29412 5' -57.5 NC_006151.1 + 132123 0.66 0.811435
Target:  5'- gAGCGGCAGgccCAGCUcgcgcCGGCGGUgGUUg -3'
miRNA:   3'- -UCGUCGUC---GUCGAu----GUCGUCGgCAGg -5'
29412 5' -57.5 NC_006151.1 + 47588 0.66 0.811435
Target:  5'- cGCGGUAaacuGCAGUacGCGGCGGCCG-Ca -3'
miRNA:   3'- uCGUCGU----CGUCGa-UGUCGUCGGCaGg -5'
29412 5' -57.5 NC_006151.1 + 74220 0.66 0.811435
Target:  5'- cGCGGUcGUAGCgcacgcccauggUGCAGCAGuuG-CCg -3'
miRNA:   3'- uCGUCGuCGUCG------------AUGUCGUCggCaGG- -5'
29412 5' -57.5 NC_006151.1 + 75457 0.66 0.811435
Target:  5'- cGCGcGUAGCGGU--CGGCGGCCGgCUu -3'
miRNA:   3'- uCGU-CGUCGUCGauGUCGUCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 103975 0.66 0.811435
Target:  5'- cGCGuCGGCgAGCUGgaGGCGGCCGUg- -3'
miRNA:   3'- uCGUcGUCG-UCGAUg-UCGUCGGCAgg -5'
29412 5' -57.5 NC_006151.1 + 137912 0.66 0.811435
Target:  5'- cGaCGGCGGCGGCUGCcacgGGC-GCCugcUCCc -3'
miRNA:   3'- uC-GUCGUCGUCGAUG----UCGuCGGc--AGG- -5'
29412 5' -57.5 NC_006151.1 + 36127 0.66 0.811435
Target:  5'- cGCGGCcGCGGCcGgAGCcacgaGGCCGcCCc -3'
miRNA:   3'- uCGUCGuCGUCGaUgUCG-----UCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 52854 0.66 0.811435
Target:  5'- cAGguGCGGCuGCUGC-GUGGCC-UCg -3'
miRNA:   3'- -UCguCGUCGuCGAUGuCGUCGGcAGg -5'
29412 5' -57.5 NC_006151.1 + 65039 0.66 0.811435
Target:  5'- cGGCAGgGGgccCGGCgGCGGCGGgCGcCCg -3'
miRNA:   3'- -UCGUCgUC---GUCGaUGUCGUCgGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 95978 0.66 0.811435
Target:  5'- cGCGGC-GCAGCaggAUGGgGGCCaccucGUCCg -3'
miRNA:   3'- uCGUCGuCGUCGa--UGUCgUCGG-----CAGG- -5'
29412 5' -57.5 NC_006151.1 + 96219 0.66 0.811435
Target:  5'- cGUGGCGGCGGCcGCGGCgaGGCgCacaaagaacugGUCCa -3'
miRNA:   3'- uCGUCGUCGUCGaUGUCG--UCG-G-----------CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.