miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29413 5' -63.9 NC_006151.1 + 36908 0.66 0.567484
Target:  5'- cGGCgCCGCGCCGGagaggcgcccuccGCCGcGGccgcGG-CUUCa -3'
miRNA:   3'- -CCGgGGCGCGGUC-------------UGGC-CC----CCaGAAG- -5'
29413 5' -63.9 NC_006151.1 + 39632 0.66 0.558888
Target:  5'- aGCaCCCGCGCCGGGCCccGGaccccGGUCc-- -3'
miRNA:   3'- cCG-GGGCGCGGUCUGG--CCc----CCAGaag -5'
29413 5' -63.9 NC_006151.1 + 5746 0.66 0.558888
Target:  5'- aGGCCgCGcCGCCGGcCCGGgcucaccgaccGGGUCc-- -3'
miRNA:   3'- -CCGGgGC-GCGGUCuGGCC-----------CCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 20455 0.66 0.558888
Target:  5'- gGGCUCgggggugGCGCCggucccccggggGGGCgCGGGGGUCgUCg -3'
miRNA:   3'- -CCGGGg------CGCGG------------UCUG-GCCCCCAGaAG- -5'
29413 5' -63.9 NC_006151.1 + 3109 0.66 0.556031
Target:  5'- aGGCCgCCGCggcgcgggucccagGCCGGGCgCGGGGcGcCcUCg -3'
miRNA:   3'- -CCGG-GGCG--------------CGGUCUG-GCCCC-CaGaAG- -5'
29413 5' -63.9 NC_006151.1 + 42286 0.66 0.549381
Target:  5'- aGCCUCuCGCC---CCGGGGGUCggaUCg -3'
miRNA:   3'- cCGGGGcGCGGucuGGCCCCCAGa--AG- -5'
29413 5' -63.9 NC_006151.1 + 10872 0.66 0.549381
Target:  5'- cGGCCCCccggcuugGUGCCGGAgaaaaGGGGGUg--- -3'
miRNA:   3'- -CCGGGG--------CGCGGUCUgg---CCCCCAgaag -5'
29413 5' -63.9 NC_006151.1 + 120104 0.66 0.549381
Target:  5'- cGGUgCUGCGCCgccgcgugguGGACaugcucaaCGGGGG-CUUCg -3'
miRNA:   3'- -CCGgGGCGCGG----------UCUG--------GCCCCCaGAAG- -5'
29413 5' -63.9 NC_006151.1 + 35411 0.66 0.549381
Target:  5'- uGGCCgCCGCGg-GGGCCGGGcaugcaaauGGUCcUCg -3'
miRNA:   3'- -CCGG-GGCGCggUCUGGCCC---------CCAGaAG- -5'
29413 5' -63.9 NC_006151.1 + 41619 0.66 0.549381
Target:  5'- cGCCCCGgaaGCCGGcgucacguCCGGGGGa---- -3'
miRNA:   3'- cCGGGGCg--CGGUCu-------GGCCCCCagaag -5'
29413 5' -63.9 NC_006151.1 + 63773 0.66 0.539924
Target:  5'- cGCCCCcgcguCGCCAGGC--GGGGUCggccgUCg -3'
miRNA:   3'- cCGGGGc----GCGGUCUGgcCCCCAGa----AG- -5'
29413 5' -63.9 NC_006151.1 + 64528 0.66 0.539924
Target:  5'- aGGCCgCCGCgGCCGcgUCGGGGG-CggCg -3'
miRNA:   3'- -CCGG-GGCG-CGGUcuGGCCCCCaGaaG- -5'
29413 5' -63.9 NC_006151.1 + 84457 0.66 0.539924
Target:  5'- -cCCCCGCGCCauGGACCGcGcGuGGUucgcCUUCg -3'
miRNA:   3'- ccGGGGCGCGG--UCUGGC-C-C-CCA----GAAG- -5'
29413 5' -63.9 NC_006151.1 + 55452 0.66 0.530523
Target:  5'- cGGCgCCGCcgGCCccGCCGGGGGgcgCg-- -3'
miRNA:   3'- -CCGgGGCG--CGGucUGGCCCCCa--Gaag -5'
29413 5' -63.9 NC_006151.1 + 31207 0.66 0.530523
Target:  5'- uGG-CCCGCGuCCAGGCCGGGcccccGGcCg-- -3'
miRNA:   3'- -CCgGGGCGC-GGUCUGGCCC-----CCaGaag -5'
29413 5' -63.9 NC_006151.1 + 27433 0.66 0.530523
Target:  5'- cGGUCCaugggCGCGgCGGACgCGGuGGGUCg-- -3'
miRNA:   3'- -CCGGG-----GCGCgGUCUG-GCC-CCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 40030 0.66 0.530523
Target:  5'- aGCgUCCGCGCCGccGCCGGGGG-Cg-- -3'
miRNA:   3'- cCG-GGGCGCGGUc-UGGCCCCCaGaag -5'
29413 5' -63.9 NC_006151.1 + 21560 0.66 0.529586
Target:  5'- gGGCCUCGgcgagccCGCCgaGGGCCGcgcGGGGUCg-- -3'
miRNA:   3'- -CCGGGGC-------GCGG--UCUGGC---CCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 32765 0.66 0.521183
Target:  5'- cGCCCCGCucucccacGCCGcGGCCGcGGGGg---- -3'
miRNA:   3'- cCGGGGCG--------CGGU-CUGGC-CCCCagaag -5'
29413 5' -63.9 NC_006151.1 + 4128 0.66 0.521183
Target:  5'- uGCCgCCGCucgGCCGGGCCGgccccGGGGaUCgcgUCg -3'
miRNA:   3'- cCGG-GGCG---CGGUCUGGC-----CCCC-AGa--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.