miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29414 3' -57.5 NC_006151.1 + 125642 0.66 0.858271
Target:  5'- gCACGGgCGuGAUCgaGGGCCAGC-UCGGc -3'
miRNA:   3'- -GUGCCaGC-CUGG--UCUGGUCGuAGCCu -5'
29414 3' -57.5 NC_006151.1 + 18183 0.66 0.858271
Target:  5'- uGCGGgCGGGCCGGuucucCCGGUAUuuaagCGGGg -3'
miRNA:   3'- gUGCCaGCCUGGUCu----GGUCGUA-----GCCU- -5'
29414 3' -57.5 NC_006151.1 + 3947 0.66 0.850561
Target:  5'- gCGCGGgcuccgCGGGcCCGGGCCGcGCggCGGc -3'
miRNA:   3'- -GUGCCa-----GCCU-GGUCUGGU-CGuaGCCu -5'
29414 3' -57.5 NC_006151.1 + 129852 0.66 0.850561
Target:  5'- aCACGGcCuGGcCCAGGCCcguGGCGUCGc- -3'
miRNA:   3'- -GUGCCaG-CCuGGUCUGG---UCGUAGCcu -5'
29414 3' -57.5 NC_006151.1 + 2605 0.66 0.842657
Target:  5'- gCGCGG-CGGcaGCgGGACCGGgGUcCGGGg -3'
miRNA:   3'- -GUGCCaGCC--UGgUCUGGUCgUA-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 95178 0.66 0.842657
Target:  5'- gCACGGUCGuGugCAGGCCcuGCAggcCGa- -3'
miRNA:   3'- -GUGCCAGC-CugGUCUGGu-CGUa--GCcu -5'
29414 3' -57.5 NC_006151.1 + 131765 0.66 0.834567
Target:  5'- uCGCGGUCGcGACCG---CGGCcgCGGGc -3'
miRNA:   3'- -GUGCCAGC-CUGGUcugGUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 118223 0.66 0.834567
Target:  5'- gGCGGgcgccCGGACCaccGGGCuCGGCggCGGGc -3'
miRNA:   3'- gUGCCa----GCCUGG---UCUG-GUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 121346 0.66 0.826297
Target:  5'- gCGCGaccucgaGGGCCAGACgGGCG-CGGAc -3'
miRNA:   3'- -GUGCcag----CCUGGUCUGgUCGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 130860 0.66 0.826297
Target:  5'- gGCGGcgCGGGCgGGACC-GCAgUGGGc -3'
miRNA:   3'- gUGCCa-GCCUGgUCUGGuCGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 11880 0.66 0.826297
Target:  5'- uCGCGGcgauUCGGGCCGcAUCGaggcGCGUCGGGg -3'
miRNA:   3'- -GUGCC----AGCCUGGUcUGGU----CGUAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 49846 0.67 0.817855
Target:  5'- gGCGG-CGGGCCcgcgcuGGGCgCAGCAcgUGGAg -3'
miRNA:   3'- gUGCCaGCCUGG------UCUG-GUCGUa-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 22522 0.67 0.809248
Target:  5'- uCGCGGgggagUCGGGCgGGGCCGGguCAggCGGAg -3'
miRNA:   3'- -GUGCC-----AGCCUGgUCUGGUC--GUa-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 57384 0.67 0.800485
Target:  5'- gGCGuGgcaGGACCAGGCCAgggccGCGUCGa- -3'
miRNA:   3'- gUGC-Cag-CCUGGUCUGGU-----CGUAGCcu -5'
29414 3' -57.5 NC_006151.1 + 94312 0.67 0.800485
Target:  5'- aGCGGUUGG-CCAcGCuCAGCGagCGGAg -3'
miRNA:   3'- gUGCCAGCCuGGUcUG-GUCGUa-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 97289 0.67 0.800485
Target:  5'- gGCGG-CGGGCguGuugaGCCGGCccGUCGGGc -3'
miRNA:   3'- gUGCCaGCCUGguC----UGGUCG--UAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 142283 0.67 0.78252
Target:  5'- -cCGG-CGG-CCAGACCGGC--CGGGa -3'
miRNA:   3'- guGCCaGCCuGGUCUGGUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 135093 0.68 0.773335
Target:  5'- gGCGG-CgGGGCCGGGCgGGCggCGGu -3'
miRNA:   3'- gUGCCaG-CCUGGUCUGgUCGuaGCCu -5'
29414 3' -57.5 NC_006151.1 + 3727 0.68 0.773335
Target:  5'- gGCGcUgGGuCCGGGCCGGCggCGGGg -3'
miRNA:   3'- gUGCcAgCCuGGUCUGGUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 123755 0.68 0.764028
Target:  5'- gGCGGUCuuuGGCgCGGGCCccgggGGCAUCGGc -3'
miRNA:   3'- gUGCCAGc--CUG-GUCUGG-----UCGUAGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.