miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29414 5' -59 NC_006151.1 + 117833 0.66 0.83617
Target:  5'- cCCggCCGGGG-CGggcCGGACUCUaccaccGCCg -3'
miRNA:   3'- -GGa-GGCCCCuGUa--GCCUGAGGcu----CGG- -5'
29414 5' -59 NC_006151.1 + 1801 0.66 0.83617
Target:  5'- aCCgggCCGGGGagGCAggcgcCGGggaggcaaGCgccgCCGGGCCg -3'
miRNA:   3'- -GGa--GGCCCC--UGUa----GCC--------UGa---GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 26344 0.66 0.83617
Target:  5'- gCCUCaCGGGGcgGCggCGGGCcgcgUCgGGGCg -3'
miRNA:   3'- -GGAG-GCCCC--UGuaGCCUG----AGgCUCGg -5'
29414 5' -59 NC_006151.1 + 59671 0.66 0.83617
Target:  5'- gCCU-CGGGGACGcgCGcGcACgcgCCGAGCa -3'
miRNA:   3'- -GGAgGCCCCUGUa-GC-C-UGa--GGCUCGg -5'
29414 5' -59 NC_006151.1 + 48798 0.66 0.83617
Target:  5'- aCC-CCGGGGcgcccACGUgGGACgccuucgccgCCGAGUUc -3'
miRNA:   3'- -GGaGGCCCC-----UGUAgCCUGa---------GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 88900 0.66 0.83617
Target:  5'- aCUCgGGGucGGCGUCGGGCgagCgGAagcGCCc -3'
miRNA:   3'- gGAGgCCC--CUGUAGCCUGa--GgCU---CGG- -5'
29414 5' -59 NC_006151.1 + 100347 0.66 0.835374
Target:  5'- gCgUCUGGcGGACGUCguGGACgccgugggcgccuUCCGcGCCg -3'
miRNA:   3'- -GgAGGCC-CCUGUAG--CCUG-------------AGGCuCGG- -5'
29414 5' -59 NC_006151.1 + 37099 0.66 0.828139
Target:  5'- uCCUCCGaGGGAgaagaagaCGaaGGAgUCCG-GCCc -3'
miRNA:   3'- -GGAGGC-CCCU--------GUagCCUgAGGCuCGG- -5'
29414 5' -59 NC_006151.1 + 78127 0.66 0.828139
Target:  5'- uCCUgCGGcGGGCcgCGGGCgccucggaCGAcGCCu -3'
miRNA:   3'- -GGAgGCC-CCUGuaGCCUGag------GCU-CGG- -5'
29414 5' -59 NC_006151.1 + 80833 0.66 0.828139
Target:  5'- --gCC-GGGACA-CGGGCg-CGAGCCg -3'
miRNA:   3'- ggaGGcCCCUGUaGCCUGagGCUCGG- -5'
29414 5' -59 NC_006151.1 + 141969 0.66 0.828139
Target:  5'- gCUCUGcGGGAUccgGUCGGGCggcCCGGGa- -3'
miRNA:   3'- gGAGGC-CCCUG---UAGCCUGa--GGCUCgg -5'
29414 5' -59 NC_006151.1 + 6120 0.66 0.828139
Target:  5'- ---aCGGGGcgGCcUCGuGGCUCCG-GCCg -3'
miRNA:   3'- ggagGCCCC--UGuAGC-CUGAGGCuCGG- -5'
29414 5' -59 NC_006151.1 + 137608 0.66 0.828139
Target:  5'- --aUCGGGGGCG-CGGGCggggaccCCGGcGCCu -3'
miRNA:   3'- ggaGGCCCCUGUaGCCUGa------GGCU-CGG- -5'
29414 5' -59 NC_006151.1 + 36864 0.66 0.827326
Target:  5'- gCCUcgCCGGGGACGgcgGGGCgcccCCGcagagacAGCCc -3'
miRNA:   3'- -GGA--GGCCCCUGUag-CCUGa---GGC-------UCGG- -5'
29414 5' -59 NC_006151.1 + 76841 0.66 0.819942
Target:  5'- gCgUCCGGGcGACGUacaGGAaggCC-AGCCg -3'
miRNA:   3'- -GgAGGCCC-CUGUAg--CCUga-GGcUCGG- -5'
29414 5' -59 NC_006151.1 + 19289 0.66 0.819942
Target:  5'- cCCaCCGGGGcCAgcggcgCGGGCggCCGGucGCCc -3'
miRNA:   3'- -GGaGGCCCCuGUa-----GCCUGa-GGCU--CGG- -5'
29414 5' -59 NC_006151.1 + 34581 0.66 0.819114
Target:  5'- cUCUCCGaccggcuGGGGCGcccUCGGAgCgcgcgCCGAGCg -3'
miRNA:   3'- -GGAGGC-------CCCUGU---AGCCU-Ga----GGCUCGg -5'
29414 5' -59 NC_006151.1 + 102136 0.66 0.817452
Target:  5'- uCC-CCGGGcGCGcCGGGCUgcuggagcgcuucgCCGAGCUc -3'
miRNA:   3'- -GGaGGCCCcUGUaGCCUGA--------------GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 92675 0.66 0.811587
Target:  5'- gCCggcggCCGGGGACGcgcgcUCGccGCgcgCCGAGCg -3'
miRNA:   3'- -GGa----GGCCCCUGU-----AGCc-UGa--GGCUCGg -5'
29414 5' -59 NC_006151.1 + 30808 0.66 0.80308
Target:  5'- gCC-CCGGGGGCAcgCGGGCgggagGAGUUg -3'
miRNA:   3'- -GGaGGCCCCUGUa-GCCUGagg--CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.