miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29415 3' -69 NC_006151.1 + 136051 0.66 0.392456
Target:  5'- gCgCCCGCGCaCCGGcaacgccgaguacgcGCCggagcgcccgcugCGCUCCAUCGc -3'
miRNA:   3'- -GgGGGCGCG-GGCC---------------CGG-------------GCGGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 7074 0.66 0.390924
Target:  5'- uCCCgCGCGCCUcugauuugcaugcccGGCCCGCUcugcggCCAUCu -3'
miRNA:   3'- -GGGgGCGCGGGc--------------CCGGGCGG------GGUAGc -5'
29415 3' -69 NC_006151.1 + 31742 0.66 0.39016
Target:  5'- gCgCCCGCGCCgGGGaCgCGCCUgCggCGg -3'
miRNA:   3'- -GgGGGCGCGGgCCC-GgGCGGG-GuaGC- -5'
29415 3' -69 NC_006151.1 + 49451 0.66 0.39016
Target:  5'- aCCUCGUcCagaCGGGCCgGgcCCCCGUCGa -3'
miRNA:   3'- gGGGGCGcGg--GCCCGGgC--GGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 108791 0.66 0.39016
Target:  5'- cUCCCCGCgGCCCcaguGGCgCaGCCCCuUCc -3'
miRNA:   3'- -GGGGGCG-CGGGc---CCGgG-CGGGGuAGc -5'
29415 3' -69 NC_006151.1 + 14925 0.66 0.39016
Target:  5'- aCCCCG-GuCCCGGGgagcagcccCCCGUCCCccgccUCGa -3'
miRNA:   3'- gGGGGCgC-GGGCCC---------GGGCGGGGu----AGC- -5'
29415 3' -69 NC_006151.1 + 23124 0.66 0.39016
Target:  5'- gCCCCGCGCCCcuccuccgucGCCgGgCCC-UCGg -3'
miRNA:   3'- gGGGGCGCGGGcc--------CGGgCgGGGuAGC- -5'
29415 3' -69 NC_006151.1 + 40467 0.66 0.39016
Target:  5'- cUCCCCG-GCCCGguGGCCCuCCUCcUCu -3'
miRNA:   3'- -GGGGGCgCGGGC--CCGGGcGGGGuAGc -5'
29415 3' -69 NC_006151.1 + 112192 0.66 0.39016
Target:  5'- gCgCCGCGCCCGcagcGCCU-CCCCGUgGg -3'
miRNA:   3'- gGgGGCGCGGGCc---CGGGcGGGGUAgC- -5'
29415 3' -69 NC_006151.1 + 17566 0.66 0.389396
Target:  5'- gCCCacgaaggcggggaUGCGCCCGGaCCCGUCC-AUCa -3'
miRNA:   3'- gGGG-------------GCGCGGGCCcGGGCGGGgUAGc -5'
29415 3' -69 NC_006151.1 + 27219 0.66 0.389396
Target:  5'- gCCCCGCGCgCCGuGGaCgCGCaCCUccucgggGUCGg -3'
miRNA:   3'- gGGGGCGCG-GGC-CC-GgGCG-GGG-------UAGC- -5'
29415 3' -69 NC_006151.1 + 9894 0.66 0.382569
Target:  5'- uCCCCgGCgGUCCGGGaagaaaGCCCCGgcgccUCGg -3'
miRNA:   3'- -GGGGgCG-CGGGCCCggg---CGGGGU-----AGC- -5'
29415 3' -69 NC_006151.1 + 78947 0.66 0.382569
Target:  5'- aCgCgCGCGCCC--GCCCGCCUCGgucUCGg -3'
miRNA:   3'- -GgGgGCGCGGGccCGGGCGGGGU---AGC- -5'
29415 3' -69 NC_006151.1 + 107496 0.66 0.382569
Target:  5'- gCCCCCGuCGCcgCCGGucgaCCCGCCCaCGcUCc -3'
miRNA:   3'- -GGGGGC-GCG--GGCCc---GGGCGGG-GU-AGc -5'
29415 3' -69 NC_006151.1 + 114687 0.66 0.382569
Target:  5'- gCCUCGUGCUCgaaGGGCgCGuCCCCGggggCGg -3'
miRNA:   3'- gGGGGCGCGGG---CCCGgGC-GGGGUa---GC- -5'
29415 3' -69 NC_006151.1 + 46572 0.66 0.382569
Target:  5'- cUCCCCGCGCa-GGGCCCGacgggcggCCGUg- -3'
miRNA:   3'- -GGGGGCGCGggCCCGGGCgg------GGUAgc -5'
29415 3' -69 NC_006151.1 + 114896 0.66 0.382569
Target:  5'- uUCCCGgGCgCGaGGCCCgggcgcacgGCCCCggCGu -3'
miRNA:   3'- gGGGGCgCGgGC-CCGGG---------CGGGGuaGC- -5'
29415 3' -69 NC_006151.1 + 91390 0.66 0.379561
Target:  5'- gCCgCCGCugccgucgacguuGCCCaggaacacggccugGGGCCCGCUCCAc-- -3'
miRNA:   3'- -GGgGGCG-------------CGGG--------------CCCGGGCGGGGUagc -5'
29415 3' -69 NC_006151.1 + 96598 0.66 0.375078
Target:  5'- gCgCCGgGCgCGGGCgCGCCgaCGUCGu -3'
miRNA:   3'- gGgGGCgCGgGCCCGgGCGGg-GUAGC- -5'
29415 3' -69 NC_006151.1 + 28310 0.66 0.375078
Target:  5'- -gCCgGCGCguccCCGGggcGCCCGCCCCcgggguUCGa -3'
miRNA:   3'- ggGGgCGCG----GGCC---CGGGCGGGGu-----AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.