miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29415 5' -54.2 NC_006151.1 + 134828 0.66 0.961522
Target:  5'- -aCGGUGGcGACCGCGcgCGcacacacgcGGGGCCc -3'
miRNA:   3'- agGCUACCaCUGGCGUa-GCa--------UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 121919 0.66 0.961522
Target:  5'- gCCGAgGGgGACCGCGUgcUGGGGgCg -3'
miRNA:   3'- aGGCUaCCaCUGGCGUAgcAUCUCgG- -5'
29415 5' -54.2 NC_006151.1 + 89554 0.66 0.961522
Target:  5'- gCCGGUGGaGGCCGCGagGcugauGGGCa -3'
miRNA:   3'- aGGCUACCaCUGGCGUagCau---CUCGg -5'
29415 5' -54.2 NC_006151.1 + 21593 0.66 0.961522
Target:  5'- gUCGAUGGcguacggcgUGGCgGCggCGUAG-GCCc -3'
miRNA:   3'- aGGCUACC---------ACUGgCGuaGCAUCuCGG- -5'
29415 5' -54.2 NC_006151.1 + 88818 0.66 0.957896
Target:  5'- gUCCGGUGGgcgagGGagGCGUUGgcGGAGCUg -3'
miRNA:   3'- -AGGCUACCa----CUggCGUAGCa-UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 113104 0.66 0.957896
Target:  5'- aCCGggGGcggGGCCGCGgaCGcGGAcGCCg -3'
miRNA:   3'- aGGCuaCCa--CUGGCGUa-GCaUCU-CGG- -5'
29415 5' -54.2 NC_006151.1 + 121016 0.66 0.957896
Target:  5'- cCUGAUGGUguuuGACCGCAcgcggcacuUUGUGcuGGCCu -3'
miRNA:   3'- aGGCUACCA----CUGGCGU---------AGCAUc-UCGG- -5'
29415 5' -54.2 NC_006151.1 + 131019 0.66 0.957521
Target:  5'- gCCGGcguagcgGGUGAaggccucCCGC-UCGUcGGGGCCg -3'
miRNA:   3'- aGGCUa------CCACU-------GGCGuAGCA-UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 40554 0.66 0.955611
Target:  5'- -gCGGUGGUGgaagcggcggcggcgGCCGCggCGgAGGGCUc -3'
miRNA:   3'- agGCUACCAC---------------UGGCGuaGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 116856 0.66 0.954042
Target:  5'- gCgGcgGGgaaGGCCGCGUCGUcGccGGCCu -3'
miRNA:   3'- aGgCuaCCa--CUGGCGUAGCAuC--UCGG- -5'
29415 5' -54.2 NC_006151.1 + 75780 0.66 0.952842
Target:  5'- gUCCGcGUGcGUGuCCGCcagCGUcagcacguggugcaGGAGCCg -3'
miRNA:   3'- -AGGC-UAC-CACuGGCGua-GCA--------------UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 77714 0.66 0.949958
Target:  5'- aCCGccagcagGACCGCGUCcUGGAGCUc -3'
miRNA:   3'- aGGCuacca--CUGGCGUAGcAUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 97993 0.66 0.949958
Target:  5'- gCCGGgcgGcGUGGCCGCGUaGgcGGcGCCg -3'
miRNA:   3'- aGGCUa--C-CACUGGCGUAgCauCU-CGG- -5'
29415 5' -54.2 NC_006151.1 + 82510 0.66 0.945638
Target:  5'- gCCGAgcaGGUGcCCGCGgaugcgcgugUCGUuGAGCg -3'
miRNA:   3'- aGGCUa--CCACuGGCGU----------AGCAuCUCGg -5'
29415 5' -54.2 NC_006151.1 + 665 0.66 0.941081
Target:  5'- gCCGGggcGGgcuccgcgGAUCGCAUCGgcgcgccGAGCCu -3'
miRNA:   3'- aGGCUa--CCa-------CUGGCGUAGCau-----CUCGG- -5'
29415 5' -54.2 NC_006151.1 + 25391 0.67 0.936284
Target:  5'- -gCGGUGGUucucGACCGCGaCGgGGGcGCCg -3'
miRNA:   3'- agGCUACCA----CUGGCGUaGCaUCU-CGG- -5'
29415 5' -54.2 NC_006151.1 + 20145 0.67 0.925963
Target:  5'- gCCGcgGG-GGCgGCG-CGUGGAccGCCg -3'
miRNA:   3'- aGGCuaCCaCUGgCGUaGCAUCU--CGG- -5'
29415 5' -54.2 NC_006151.1 + 122678 0.67 0.925963
Target:  5'- gCCGA-GGUG-CgCGCGgcggcCGUGGAGCUc -3'
miRNA:   3'- aGGCUaCCACuG-GCGUa----GCAUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 3633 0.67 0.914672
Target:  5'- cCCGcgGaG-GGCCGCGcCGgAGAGCCc -3'
miRNA:   3'- aGGCuaC-CaCUGGCGUaGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 81567 0.67 0.912894
Target:  5'- gCCG-UGGUGcggagcagggucucGCgCGCGUCGccGGGGCCg -3'
miRNA:   3'- aGGCuACCAC--------------UG-GCGUAGCa-UCUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.