miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 3' -58.4 NC_006151.1 + 105258 0.66 0.822265
Target:  5'- gCCUGG-GACGAggccugGGAGGACUuugGGCg- -3'
miRNA:   3'- aGGACCuCUGCUg-----CCUCCUGG---UCGac -5'
29416 3' -58.4 NC_006151.1 + 5843 0.66 0.822265
Target:  5'- gCCggGGAGGCuGCGGAgggGGACgAGCg- -3'
miRNA:   3'- aGGa-CCUCUGcUGCCU---CCUGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 5039 0.66 0.822265
Target:  5'- gCCggGGAGgccGCGGCGGAGGAggaGGCg- -3'
miRNA:   3'- aGGa-CCUC---UGCUGCCUCCUgg-UCGac -5'
29416 3' -58.4 NC_006151.1 + 133498 0.66 0.822265
Target:  5'- cCUUGGcGGCG-CGGGGGGCgCGGgaGg -3'
miRNA:   3'- aGGACCuCUGCuGCCUCCUG-GUCgaC- -5'
29416 3' -58.4 NC_006151.1 + 106478 0.66 0.813761
Target:  5'- cCCUGGGcGCacACGGAgacGGGCCAGCg- -3'
miRNA:   3'- aGGACCUcUGc-UGCCU---CCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 104564 0.66 0.813761
Target:  5'- cCCUGGGcgcGCGGCGcGcGGACguGCUGc -3'
miRNA:   3'- aGGACCUc--UGCUGC-CuCCUGguCGAC- -5'
29416 3' -58.4 NC_006151.1 + 75019 0.66 0.813761
Target:  5'- aCCUGGGGcACGGCGaAGGGCCcGggGa -3'
miRNA:   3'- aGGACCUC-UGCUGCcUCCUGGuCgaC- -5'
29416 3' -58.4 NC_006151.1 + 57031 0.66 0.813761
Target:  5'- aUCCaGGgcaGGAUcaGCGGGGGGCgCAGCUGc -3'
miRNA:   3'- -AGGaCC---UCUGc-UGCCUCCUG-GUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 130941 0.66 0.805096
Target:  5'- ---cGGGGGCGGCGGGGGgucgcGCgGGCg- -3'
miRNA:   3'- aggaCCUCUGCUGCCUCC-----UGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 103420 0.66 0.805096
Target:  5'- -gCUGGGccCGGCGGuGGACCuGCUc -3'
miRNA:   3'- agGACCUcuGCUGCCuCCUGGuCGAc -5'
29416 3' -58.4 NC_006151.1 + 71562 0.66 0.796279
Target:  5'- ---gGGGGGCGA-GGGGGACgGGCg- -3'
miRNA:   3'- aggaCCUCUGCUgCCUCCUGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 82681 0.66 0.796279
Target:  5'- gCCgcgGGcgaGGGCGGCGGcccccgcgAGGGCCAGgaGg -3'
miRNA:   3'- aGGa--CC---UCUGCUGCC--------UCCUGGUCgaC- -5'
29416 3' -58.4 NC_006151.1 + 86128 0.66 0.79539
Target:  5'- aCCUGGcccuguacgauagGGACGGCGG-GGAgCucgcGCUGa -3'
miRNA:   3'- aGGACC-------------UCUGCUGCCuCCUgGu---CGAC- -5'
29416 3' -58.4 NC_006151.1 + 108703 0.66 0.79092
Target:  5'- cUCCUGGAGcccccgggaguggugGCcagcgccgaggaGACGGuGGcCCGGCUGc -3'
miRNA:   3'- -AGGACCUC---------------UG------------CUGCCuCCuGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 49160 0.66 0.787318
Target:  5'- gCCUGGAGGCcugGGCGcgccgcGGGGugCuGCUGc -3'
miRNA:   3'- aGGACCUCUG---CUGC------CUCCugGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 90750 0.66 0.778222
Target:  5'- cCCUcGGGGGCGGCGGgcacgguggcGGGGUCGGCg- -3'
miRNA:   3'- aGGA-CCUCUGCUGCC----------UCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 5986 0.67 0.768998
Target:  5'- gCCugaUGGAGAgccCGAcCGGGGGAcCCGGCg- -3'
miRNA:   3'- aGG---ACCUCU---GCU-GCCUCCU-GGUCGac -5'
29416 3' -58.4 NC_006151.1 + 131503 0.67 0.740651
Target:  5'- aCCaGGAGccccGCG-CGGGGGAaCGGCUGg -3'
miRNA:   3'- aGGaCCUC----UGCuGCCUCCUgGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 110033 0.67 0.721277
Target:  5'- gCCUGGAgGACGAggaGGGGGACgAGg-- -3'
miRNA:   3'- aGGACCU-CUGCUg--CCUCCUGgUCgac -5'
29416 3' -58.4 NC_006151.1 + 61772 0.68 0.711475
Target:  5'- gCCgUGGuGcuGCGGCGcGAGGccgGCCGGCUGg -3'
miRNA:   3'- aGG-ACCuC--UGCUGC-CUCC---UGGUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.