miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 5' -60.5 NC_006151.1 + 131782 0.66 0.745958
Target:  5'- -gCCGCGGGCgCCGCcGUcgUCAgcgcgccauCCUCCu -3'
miRNA:   3'- ggGGCGCCUG-GGCGaCA--AGU---------GGAGGu -5'
29416 5' -60.5 NC_006151.1 + 116937 0.66 0.745023
Target:  5'- uCgUCGCGGGCCagguugaggggcgUGCaGUUgACCUCCAc -3'
miRNA:   3'- -GgGGCGCCUGG-------------GCGaCAAgUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 139011 0.66 0.736567
Target:  5'- cCUCCGCgaGGACCCcaucacGCUGgcaCACCgCCAu -3'
miRNA:   3'- -GGGGCG--CCUGGG------CGACaa-GUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 117576 0.66 0.736567
Target:  5'- uCCCCGCGGAggaugggCCGCguggCGCCgCCGc -3'
miRNA:   3'- -GGGGCGCCUg------GGCGacaaGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 128097 0.66 0.736567
Target:  5'- gUCCCGCuGGCCCGUcg-UCGCCagCAc -3'
miRNA:   3'- -GGGGCGcCUGGGCGacaAGUGGagGU- -5'
29416 5' -60.5 NC_006151.1 + 109246 0.66 0.736567
Target:  5'- gCCgCCGCGGuCuCCGCUGgcgGCC-CCGa -3'
miRNA:   3'- -GG-GGCGCCuG-GGCGACaagUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 62518 0.66 0.736567
Target:  5'- gCCCgGCGGuACCUGCaGaagCGCCUgCAc -3'
miRNA:   3'- -GGGgCGCC-UGGGCGaCaa-GUGGAgGU- -5'
29416 5' -60.5 NC_006151.1 + 60547 0.66 0.728042
Target:  5'- cCCCCGCGGcgaggcgcgcGCCCaggaggccgaagaaGCUGUcCcccgccgcccccgccGCCUCCAc -3'
miRNA:   3'- -GGGGCGCC----------UGGG--------------CGACAaG---------------UGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 100774 0.66 0.727091
Target:  5'- -gCCGCGGACCgCGUccUGggCGaCUCCAc -3'
miRNA:   3'- ggGGCGCCUGG-GCG--ACaaGUgGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 122389 0.66 0.727091
Target:  5'- gCgCCGCGGGCgCgCGCUGgcggcgcUCGCCgCCGu -3'
miRNA:   3'- -GgGGCGCCUG-G-GCGACa------AGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 41596 0.66 0.727091
Target:  5'- aUCCGCGGAgCCCGCcccgGccgCGCC-CCGg -3'
miRNA:   3'- gGGGCGCCU-GGGCGa---Caa-GUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 108322 0.66 0.717539
Target:  5'- cCCCCGCgcccGGGCCCGCcc--CAUCggCCAa -3'
miRNA:   3'- -GGGGCG----CCUGGGCGacaaGUGGa-GGU- -5'
29416 5' -60.5 NC_006151.1 + 107260 0.66 0.717539
Target:  5'- gCCCgCGUGGACCCGgc---CACCUCgGa -3'
miRNA:   3'- -GGG-GCGCCUGGGCgacaaGUGGAGgU- -5'
29416 5' -60.5 NC_006151.1 + 69205 0.66 0.717539
Target:  5'- gCUCCG-GGGCCCGCgccGgcCGCC-CCAg -3'
miRNA:   3'- -GGGGCgCCUGGGCGa--CaaGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 39134 0.66 0.713698
Target:  5'- gCCCCGCgcccggccugGGACCCGCgccgcggcgGCCUCUc -3'
miRNA:   3'- -GGGGCG----------CCUGGGCGacaag----UGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 128603 0.66 0.707919
Target:  5'- gCCCGCGcGccACCCGCggcGUgCGCC-CCAg -3'
miRNA:   3'- gGGGCGC-C--UGGGCGa--CAaGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 120346 0.66 0.698239
Target:  5'- gCCCGCguggccGGGCUCGC-GggCGCCUaCCAg -3'
miRNA:   3'- gGGGCG------CCUGGGCGaCaaGUGGA-GGU- -5'
29416 5' -60.5 NC_006151.1 + 60692 0.66 0.698239
Target:  5'- cUCCCGCGcGCCCGCcg--CGCCcgCCGc -3'
miRNA:   3'- -GGGGCGCcUGGGCGacaaGUGGa-GGU- -5'
29416 5' -60.5 NC_006151.1 + 37462 0.66 0.698239
Target:  5'- -gCCGCGG-CCCGCUaccgCGCCgcggCCGg -3'
miRNA:   3'- ggGGCGCCuGGGCGAcaa-GUGGa---GGU- -5'
29416 5' -60.5 NC_006151.1 + 131982 0.67 0.688507
Target:  5'- -gUCGCGGuACUCGCgcgaGUagGCCUCCAu -3'
miRNA:   3'- ggGGCGCC-UGGGCGa---CAagUGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.