miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29417 3' -61.4 NC_006151.1 + 74305 0.66 0.690293
Target:  5'- cGACCacUCGGCgUCgUGGuGCGGGUGCa -3'
miRNA:   3'- cCUGG--AGUCG-AGgACCcCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 55358 0.66 0.690293
Target:  5'- gGGGCCUCcGCgagCa-GGuGcGCGAGCGCg -3'
miRNA:   3'- -CCUGGAGuCGa--GgaCC-C-CGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 9046 0.66 0.690293
Target:  5'- gGGcGCCccgCGuGCUCCgGGGGCGccGGCcgGCCa -3'
miRNA:   3'- -CC-UGGa--GU-CGAGGaCCCCGC--UCG--CGG- -5'
29417 3' -61.4 NC_006151.1 + 99893 0.66 0.680531
Target:  5'- cGGACCUggcgCAGgUgCUGacguGGGCGcgcgacuacGGCGCCg -3'
miRNA:   3'- -CCUGGA----GUCgAgGAC----CCCGC---------UCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 28159 0.66 0.680531
Target:  5'- cGAUCcccgUCGGCgUCgUUGGGGCggcGAGUGCCg -3'
miRNA:   3'- cCUGG----AGUCG-AG-GACCCCG---CUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 28587 0.66 0.680531
Target:  5'- uGGCCggcGCgUCCccGGaGGCGGGUGCCg -3'
miRNA:   3'- cCUGGaguCG-AGGa-CC-CCGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 30740 0.66 0.680531
Target:  5'- cGGGCC-CGGagugCCgcgggcGGGGCGGGgGCa -3'
miRNA:   3'- -CCUGGaGUCga--GGa-----CCCCGCUCgCGg -5'
29417 3' -61.4 NC_006151.1 + 87348 0.66 0.680531
Target:  5'- cGGGCCUcCAGggCCUGGcGGCccccgucGCGCa -3'
miRNA:   3'- -CCUGGA-GUCgaGGACC-CCGcu-----CGCGg -5'
29417 3' -61.4 NC_006151.1 + 131036 0.66 0.680531
Target:  5'- aGGCCUCccGCUCgUcGGGGCcgGAG-GCCg -3'
miRNA:   3'- cCUGGAGu-CGAGgA-CCCCG--CUCgCGG- -5'
29417 3' -61.4 NC_006151.1 + 67842 0.66 0.670733
Target:  5'- gGGGgCUCAGCagCCcGGcGaGCcGGCGCCg -3'
miRNA:   3'- -CCUgGAGUCGa-GGaCC-C-CGcUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 141572 0.66 0.670733
Target:  5'- cGAuCCUCcgccGCUCCUccccccGGGCGAGaGCCg -3'
miRNA:   3'- cCU-GGAGu---CGAGGAc-----CCCGCUCgCGG- -5'
29417 3' -61.4 NC_006151.1 + 34990 0.66 0.670733
Target:  5'- uGGCCgagggCGGCcaCgUGGGGCGAGCauGCa -3'
miRNA:   3'- cCUGGa----GUCGa-GgACCCCGCUCG--CGg -5'
29417 3' -61.4 NC_006151.1 + 36852 0.66 0.670733
Target:  5'- aGGACggaCUCGGCcucgCC-GGGGacggcgGGGCGCCc -3'
miRNA:   3'- -CCUG---GAGUCGa---GGaCCCCg-----CUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 40425 0.66 0.670733
Target:  5'- cGGuccCCUCGGC-CC-GGcGGCGcuugccuccccGGCGCCu -3'
miRNA:   3'- -CCu--GGAGUCGaGGaCC-CCGC-----------UCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 76794 0.66 0.670733
Target:  5'- cGGcGCCguaCAGCgccCCggcGaGGGCGGGCGCg -3'
miRNA:   3'- -CC-UGGa--GUCGa--GGa--C-CCCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 92110 0.66 0.667787
Target:  5'- cGGACCgCGGCaUCUUcGGGaacggccgcaucgcGCGcGGCGCCa -3'
miRNA:   3'- -CCUGGaGUCG-AGGA-CCC--------------CGC-UCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 21559 0.66 0.664839
Target:  5'- uGGGCCUCGGCgagcccgccgagggCCgcgcGGGGuCGAugGCGUa -3'
miRNA:   3'- -CCUGGAGUCGa-------------GGa---CCCC-GCU--CGCGg -5'
29417 3' -61.4 NC_006151.1 + 38542 0.66 0.660905
Target:  5'- cGGACC-CAGCgCCcGaGcGGCGcaagaagaAGCGCCg -3'
miRNA:   3'- -CCUGGaGUCGaGGaC-C-CCGC--------UCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 122946 0.66 0.660905
Target:  5'- cGACggCGGCgCCgcggGGGGCGcGGaCGCCg -3'
miRNA:   3'- cCUGgaGUCGaGGa---CCCCGC-UC-GCGG- -5'
29417 3' -61.4 NC_006151.1 + 17423 0.66 0.660905
Target:  5'- aGGGCC--AGCgagCCgGGGGCGAucuccgaggaGCGCa -3'
miRNA:   3'- -CCUGGagUCGa--GGaCCCCGCU----------CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.