miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29417 5' -53.3 NC_006151.1 + 71008 0.66 0.979161
Target:  5'- aUCGugGGCGccauGCgCCG-CGAGcuCGCGg -3'
miRNA:   3'- -AGCugCUGU----UGgGGUaGCUCuuGCGC- -5'
29417 5' -53.3 NC_006151.1 + 57520 0.66 0.979161
Target:  5'- gCGGCGGCGGCCgCCuccggCGcGGcCGCGg -3'
miRNA:   3'- aGCUGCUGUUGG-GGua---GCuCUuGCGC- -5'
29417 5' -53.3 NC_006151.1 + 59493 0.66 0.979161
Target:  5'- cUCGAagagccCGGCGGCCUCcgCGAcGcGCGCGc -3'
miRNA:   3'- -AGCU------GCUGUUGGGGuaGCU-CuUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 90110 0.66 0.979161
Target:  5'- cCG-CGGCGACgCCCAUgaCGAGGcAgGCGg -3'
miRNA:   3'- aGCuGCUGUUG-GGGUA--GCUCU-UgCGC- -5'
29417 5' -53.3 NC_006151.1 + 97368 0.66 0.979161
Target:  5'- gCGGCGGCGGgCgCggCGGGGGCGuCGg -3'
miRNA:   3'- aGCUGCUGUUgGgGuaGCUCUUGC-GC- -5'
29417 5' -53.3 NC_006151.1 + 118890 0.66 0.979161
Target:  5'- gCGGCGACGcgGCCgCCggCGGccucGAGCGCc -3'
miRNA:   3'- aGCUGCUGU--UGG-GGuaGCU----CUUGCGc -5'
29417 5' -53.3 NC_006151.1 + 135902 0.66 0.979161
Target:  5'- gUCGcCGccGCGACCCCGgcggUCGuGcGCGCGc -3'
miRNA:   3'- -AGCuGC--UGUUGGGGU----AGCuCuUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 20465 0.66 0.979161
Target:  5'- gUGGCGcCGGucCCCCGg-GGGGGCGCGg -3'
miRNA:   3'- aGCUGCuGUU--GGGGUagCUCUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 30953 0.66 0.979161
Target:  5'- aUCG-CGGCGGCCCgG--GAGAGCGgGc -3'
miRNA:   3'- -AGCuGCUGUUGGGgUagCUCUUGCgC- -5'
29417 5' -53.3 NC_006151.1 + 39110 0.66 0.979161
Target:  5'- cUCuGCGcCGAgCCCGcCGAGGGCGCc -3'
miRNA:   3'- -AGcUGCuGUUgGGGUaGCUCUUGCGc -5'
29417 5' -53.3 NC_006151.1 + 133881 0.66 0.979161
Target:  5'- aCGGCGGCGGCCgugggcugauCCAcCGGGAcuccccuggcgGCGCa -3'
miRNA:   3'- aGCUGCUGUUGG----------GGUaGCUCU-----------UGCGc -5'
29417 5' -53.3 NC_006151.1 + 139602 0.66 0.979161
Target:  5'- cCGAgCGGCGG-CCCGUCc-GGGCGCGg -3'
miRNA:   3'- aGCU-GCUGUUgGGGUAGcuCUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 136850 0.66 0.978475
Target:  5'- cCGcCGGCcucgcgcgccgcguGACCgCCGUCGAGgAGCGCc -3'
miRNA:   3'- aGCuGCUG--------------UUGG-GGUAGCUC-UUGCGc -5'
29417 5' -53.3 NC_006151.1 + 64245 0.66 0.976809
Target:  5'- gCGACGGCGGCgcgggCCAcgcucUCGuuGACGCGg -3'
miRNA:   3'- aGCUGCUGUUGg----GGU-----AGCucUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 104459 0.66 0.976809
Target:  5'- aCGcCGugGGCUUCGUCGGGGcggacaugGCGCa -3'
miRNA:   3'- aGCuGCugUUGGGGUAGCUCU--------UGCGc -5'
29417 5' -53.3 NC_006151.1 + 10208 0.66 0.976809
Target:  5'- -gGGCGGCGGCUgCAgaggCGGcugcGGACGCGg -3'
miRNA:   3'- agCUGCUGUUGGgGUa---GCU----CUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 76262 0.66 0.976809
Target:  5'- cUCGACGGCGA-----UCGAGAAgGCGg -3'
miRNA:   3'- -AGCUGCUGUUgggguAGCUCUUgCGC- -5'
29417 5' -53.3 NC_006151.1 + 108303 0.66 0.976809
Target:  5'- cCGGCGGCGACCCCcaCGcccccCGCGc -3'
miRNA:   3'- aGCUGCUGUUGGGGuaGCucuu-GCGC- -5'
29417 5' -53.3 NC_006151.1 + 66815 0.66 0.974268
Target:  5'- aCGACGACGGCgaCGagGAGGAUGgGg -3'
miRNA:   3'- aGCUGCUGUUGggGUagCUCUUGCgC- -5'
29417 5' -53.3 NC_006151.1 + 139957 0.66 0.974268
Target:  5'- uUCGGCGccgaGCAguucACCCCGgaCGGGcGGCGCGu -3'
miRNA:   3'- -AGCUGC----UGU----UGGGGUa-GCUC-UUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.