miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29418 3' -65.6 NC_006151.1 + 71329 0.66 0.52716
Target:  5'- cGCGGCGGcUGCgccgacgaccUCGcCGuGGCCCuCGUc -3'
miRNA:   3'- cCGCCGCC-ACG----------AGCaGCcCCGGG-GCG- -5'
29418 3' -65.6 NC_006151.1 + 135007 0.66 0.52716
Target:  5'- uGGCGGgGGcGCggGggggcagcagCGGGGCCgCGUc -3'
miRNA:   3'- -CCGCCgCCaCGagCa---------GCCCCGGgGCG- -5'
29418 3' -65.6 NC_006151.1 + 141818 0.66 0.52716
Target:  5'- gGGCa-CGGgccgGUUCG--GGGGUCCCGCg -3'
miRNA:   3'- -CCGccGCCa---CGAGCagCCCCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 49614 0.66 0.52716
Target:  5'- cGGUccuGGCGGUGCUgcgcgaGUgGGGGUgggCCGUg -3'
miRNA:   3'- -CCG---CCGCCACGAg-----CAgCCCCGg--GGCG- -5'
29418 3' -65.6 NC_006151.1 + 59425 0.66 0.52716
Target:  5'- aGCGGCGccaGCUCGgCGucGGCCgCCGCc -3'
miRNA:   3'- cCGCCGCca-CGAGCaGCc-CCGG-GGCG- -5'
29418 3' -65.6 NC_006151.1 + 69141 0.66 0.52716
Target:  5'- gGGCGcGCGGgUGCUCGaCGccGUgCCGCu -3'
miRNA:   3'- -CCGC-CGCC-ACGAGCaGCccCGgGGCG- -5'
29418 3' -65.6 NC_006151.1 + 74313 0.66 0.52716
Target:  5'- cGGCGucGUGGUGCggGUgcaGGGGCUgguucucguuCCGCa -3'
miRNA:   3'- -CCGC--CGCCACGagCAg--CCCCGG----------GGCG- -5'
29418 3' -65.6 NC_006151.1 + 82065 0.66 0.52716
Target:  5'- aGGCGGCcacGUcGCgcaUCGUCuGGugcauGGCCCCGUc -3'
miRNA:   3'- -CCGCCGc--CA-CG---AGCAG-CC-----CCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 117247 0.66 0.52716
Target:  5'- cGuCGGCGG-GCcCGaggCGcGGGCCgCGCg -3'
miRNA:   3'- cC-GCCGCCaCGaGCa--GC-CCCGGgGCG- -5'
29418 3' -65.6 NC_006151.1 + 55889 0.66 0.52716
Target:  5'- cGCGGCGGacGUgCGcCGGgcgaccgagcGGCUCCGCg -3'
miRNA:   3'- cCGCCGCCa-CGaGCaGCC----------CCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 21610 0.66 0.518019
Target:  5'- uGGCGGCGGcguagGCcCG-CGGGagcGUCCgGCc -3'
miRNA:   3'- -CCGCCGCCa----CGaGCaGCCC---CGGGgCG- -5'
29418 3' -65.6 NC_006151.1 + 10470 0.66 0.518019
Target:  5'- cGGCGGCGGUgaaggaggagaGC-CGccCGGcGcGCgCCCGCc -3'
miRNA:   3'- -CCGCCGCCA-----------CGaGCa-GCC-C-CG-GGGCG- -5'
29418 3' -65.6 NC_006151.1 + 127967 0.66 0.518019
Target:  5'- cGGCGaaGgGGUccacguaCUCGUgCGGcGGCUCCGCg -3'
miRNA:   3'- -CCGC--CgCCAc------GAGCA-GCC-CCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 113310 0.66 0.518019
Target:  5'- cGCGGUGGacGCcaCGcUGGGGCCCgUGCu -3'
miRNA:   3'- cCGCCGCCa-CGa-GCaGCCCCGGG-GCG- -5'
29418 3' -65.6 NC_006151.1 + 85163 0.66 0.517109
Target:  5'- aGGgGGcCGGcGC-CG-CGGGcgccgccGCCCCGCu -3'
miRNA:   3'- -CCgCC-GCCaCGaGCaGCCC-------CGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 100071 0.66 0.508942
Target:  5'- cGCGGCcgccgaGGUGCUCGaggcgcCGGcgccGGCgCCGCc -3'
miRNA:   3'- cCGCCG------CCACGAGCa-----GCC----CCGgGGCG- -5'
29418 3' -65.6 NC_006151.1 + 99720 0.66 0.508942
Target:  5'- aGGCGccgacgagcGCGGcGCUCGUCGaccucGCCgCCGCc -3'
miRNA:   3'- -CCGC---------CGCCaCGAGCAGCcc---CGG-GGCG- -5'
29418 3' -65.6 NC_006151.1 + 91750 0.66 0.508942
Target:  5'- gGGCGaGCGG-GCUCGggCGGGcGgUgUGCg -3'
miRNA:   3'- -CCGC-CGCCaCGAGCa-GCCC-CgGgGCG- -5'
29418 3' -65.6 NC_006151.1 + 31556 0.66 0.508942
Target:  5'- uGGCGccGCGGUGCgcgaaCGUgaucaCGGGggggcggcgcGCUCCGCg -3'
miRNA:   3'- -CCGC--CGCCACGa----GCA-----GCCC----------CGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 3076 0.66 0.508942
Target:  5'- aGGCGGUGGgcgaagGCggcgagcagCGcCGaGaGGCCgCCGCg -3'
miRNA:   3'- -CCGCCGCCa-----CGa--------GCaGC-C-CCGG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.