miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29418 5' -53.8 NC_006151.1 + 122648 0.66 0.946885
Target:  5'- cUGGAcGACCUGGAgCG-GcGCgagCGCCg -3'
miRNA:   3'- uACCUcUUGGACCU-GCaCaUGa--GCGG- -5'
29418 5' -53.8 NC_006151.1 + 120908 0.66 0.946441
Target:  5'- gGUGGugcuGGGCCUGGGCGUcagcaaGUACcacggcaUgGCCg -3'
miRNA:   3'- -UACCu---CUUGGACCUGCA------CAUG-------AgCGG- -5'
29418 5' -53.8 NC_006151.1 + 138531 0.66 0.944186
Target:  5'- -gGGuGAugggcgcguacgccgGCCUGGGCGcGUACUaCGCg -3'
miRNA:   3'- uaCCuCU---------------UGGACCUGCaCAUGA-GCGg -5'
29418 5' -53.8 NC_006151.1 + 92797 0.66 0.9414
Target:  5'- -aGGAGc-CCUcGGACGUGacaaggucuuugGCUCGCUg -3'
miRNA:   3'- uaCCUCuuGGA-CCUGCACa-----------UGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 101541 0.67 0.937547
Target:  5'- cGUGGcGcGCCUgcgcccggcGGACGUGUACgCGCa -3'
miRNA:   3'- -UACCuCuUGGA---------CCUGCACAUGaGCGg -5'
29418 5' -53.8 NC_006151.1 + 103836 0.67 0.937547
Target:  5'- cGUGGAGAugCUcGGGCGgcUGCgcgCGCa -3'
miRNA:   3'- -UACCUCUugGA-CCUGCacAUGa--GCGg -5'
29418 5' -53.8 NC_006151.1 + 95422 0.67 0.932507
Target:  5'- cGUGcAGAGgUUGGACGUGgcgaggGCggCGCCg -3'
miRNA:   3'- -UACcUCUUgGACCUGCACa-----UGa-GCGG- -5'
29418 5' -53.8 NC_006151.1 + 31752 0.67 0.932507
Target:  5'- -cGGGGAcgcGCCUGcGGCGgcggGCgcgCGCCg -3'
miRNA:   3'- uaCCUCU---UGGAC-CUGCaca-UGa--GCGG- -5'
29418 5' -53.8 NC_006151.1 + 96994 0.67 0.92722
Target:  5'- -cGGAGggUCagcgGGgggacacgcgcGCGUGUGCcCGCCu -3'
miRNA:   3'- uaCCUCuuGGa---CC-----------UGCACAUGaGCGG- -5'
29418 5' -53.8 NC_006151.1 + 106777 0.67 0.92722
Target:  5'- -cGuGAGcGCCUGGaccuggccgcgGCGgcgGUGCUCGUCg -3'
miRNA:   3'- uaC-CUCuUGGACC-----------UGCa--CAUGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 33099 0.67 0.92722
Target:  5'- gGUGGAGGGgggagaggaaggUCUGGGCGcGUGC-CGCg -3'
miRNA:   3'- -UACCUCUU------------GGACCUGCaCAUGaGCGg -5'
29418 5' -53.8 NC_006151.1 + 112561 0.67 0.921684
Target:  5'- --cGuGAugCUGGACGaGgaggACUCGCCc -3'
miRNA:   3'- uacCuCUugGACCUGCaCa---UGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 102998 0.67 0.921684
Target:  5'- cUGGAGGcggGCgaGGACGUGagcacggACgagCGCCu -3'
miRNA:   3'- uACCUCU---UGgaCCUGCACa------UGa--GCGG- -5'
29418 5' -53.8 NC_006151.1 + 11048 0.67 0.921684
Target:  5'- -cGGGGGcccgGCCUGGACGcgggccacacUGUGCggcggaccgUGCCa -3'
miRNA:   3'- uaCCUCU----UGGACCUGC----------ACAUGa--------GCGG- -5'
29418 5' -53.8 NC_006151.1 + 80334 0.67 0.915899
Target:  5'- -gGGGGGACCgGGGCGagGgcgGCUCuCCg -3'
miRNA:   3'- uaCCUCUUGGaCCUGCa-Ca--UGAGcGG- -5'
29418 5' -53.8 NC_006151.1 + 134062 0.67 0.915899
Target:  5'- -aGGAGAccauCCUGG-UGUGUGCgagcgaGCCc -3'
miRNA:   3'- uaCCUCUu---GGACCuGCACAUGag----CGG- -5'
29418 5' -53.8 NC_006151.1 + 45167 0.67 0.915899
Target:  5'- gAUGGAcGGACggGGugGcGUGCcCGCCa -3'
miRNA:   3'- -UACCU-CUUGgaCCugCaCAUGaGCGG- -5'
29418 5' -53.8 NC_006151.1 + 53842 0.67 0.915899
Target:  5'- --uGAGggUCUGGAUGcacGUGCUCuuGCCg -3'
miRNA:   3'- uacCUCuuGGACCUGCa--CAUGAG--CGG- -5'
29418 5' -53.8 NC_006151.1 + 118771 0.68 0.909867
Target:  5'- cGUGcGGAACCUGGACGcgGUGg-CGCg -3'
miRNA:   3'- -UACcUCUUGGACCUGCa-CAUgaGCGg -5'
29418 5' -53.8 NC_006151.1 + 98414 0.68 0.90359
Target:  5'- --cGAGAcgggcACCUGcgaGGCGgccGUGCUCGCCg -3'
miRNA:   3'- uacCUCU-----UGGAC---CUGCa--CAUGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.