miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 3' -55.3 NC_006151.1 + 101186 0.66 0.933721
Target:  5'- cGGCcgaCGcCGUgGACGCGUGCCUGCg- -3'
miRNA:   3'- -CCGa--GUaGUAgCUGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 130124 0.66 0.933721
Target:  5'- gGGUUCuggcCGUgGGCGCGCGCCaGCa- -3'
miRNA:   3'- -CCGAGua--GUAgCUGUGCGUGGgCGac -5'
29419 3' -55.3 NC_006151.1 + 131257 0.66 0.933721
Target:  5'- aGCUCccCGUCGGacCACGCGCCCcccucGCUc -3'
miRNA:   3'- cCGAGuaGUAGCU--GUGCGUGGG-----CGAc -5'
29419 3' -55.3 NC_006151.1 + 128503 0.66 0.928569
Target:  5'- uGGCUCGUCA---GCACgaGCACCuCGCc- -3'
miRNA:   3'- -CCGAGUAGUagcUGUG--CGUGG-GCGac -5'
29419 3' -55.3 NC_006151.1 + 54431 0.66 0.928569
Target:  5'- cGGCgcuUCggCGACGagGCGCCCGCc- -3'
miRNA:   3'- -CCGaguAGuaGCUGUg-CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 59504 0.66 0.928569
Target:  5'- cGGCggCcUCcgCGACGCGCGCgcagcgCCGCg- -3'
miRNA:   3'- -CCGa-GuAGuaGCUGUGCGUG------GGCGac -5'
29419 3' -55.3 NC_006151.1 + 63756 0.66 0.928569
Target:  5'- cGGCggggCGUCcUCGGCGC-C-CCCGCg- -3'
miRNA:   3'- -CCGa---GUAGuAGCUGUGcGuGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 72050 0.66 0.928569
Target:  5'- cGCgcagCGUCucggCGGCGCGCgccaccACCCGCg- -3'
miRNA:   3'- cCGa---GUAGua--GCUGUGCG------UGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 104992 0.66 0.928569
Target:  5'- cGCUCAaCAUCGACcgggcCGCcUCCGCg- -3'
miRNA:   3'- cCGAGUaGUAGCUGu----GCGuGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 132421 0.66 0.928569
Target:  5'- aGCUUGcccUCGUCGcgGCGCGCCUGCg- -3'
miRNA:   3'- cCGAGU---AGUAGCugUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 105049 0.66 0.928569
Target:  5'- uGCUCGgcgcCGUCGAgGagGCGCCCgaGCUGg -3'
miRNA:   3'- cCGAGUa---GUAGCUgUg-CGUGGG--CGAC- -5'
29419 3' -55.3 NC_006151.1 + 111113 0.66 0.927509
Target:  5'- uGGCUCGgcggggagcgcgCGUCuguGCGCGCcCCCGCg- -3'
miRNA:   3'- -CCGAGUa-----------GUAGc--UGUGCGuGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 57226 0.66 0.923174
Target:  5'- aGGC-CGUCGcaggCGGCGCGCGCggccucggcguCCGCg- -3'
miRNA:   3'- -CCGaGUAGUa---GCUGUGCGUG-----------GGCGac -5'
29419 3' -55.3 NC_006151.1 + 65046 0.66 0.923174
Target:  5'- gGGCcCggCggCGGCGgGCGCCCGUUa -3'
miRNA:   3'- -CCGaGuaGuaGCUGUgCGUGGGCGAc -5'
29419 3' -55.3 NC_006151.1 + 45436 0.66 0.923174
Target:  5'- gGGUUCGcgggCGUCG-CACGCAC-CGCg- -3'
miRNA:   3'- -CCGAGUa---GUAGCuGUGCGUGgGCGac -5'
29419 3' -55.3 NC_006151.1 + 57723 0.66 0.923174
Target:  5'- cGGCUUgac--CG-CGCGCGCCCGCa- -3'
miRNA:   3'- -CCGAGuaguaGCuGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 104357 0.66 0.923174
Target:  5'- cGCUCuUCGgcgcCGACACGgAgCCGCUc -3'
miRNA:   3'- cCGAGuAGUa---GCUGUGCgUgGGCGAc -5'
29419 3' -55.3 NC_006151.1 + 62547 0.66 0.917538
Target:  5'- cGGC-CGgggCAaCGACGaGUACCUGCUGg -3'
miRNA:   3'- -CCGaGUa--GUaGCUGUgCGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 132490 0.66 0.917538
Target:  5'- aGGCgcgCGUag-CGcuccuCGCGCGCCCGCa- -3'
miRNA:   3'- -CCGa--GUAguaGCu----GUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 60255 0.66 0.917538
Target:  5'- aGCUCGUCG-CGcagcagccgccGCACGCGcCCCGUg- -3'
miRNA:   3'- cCGAGUAGUaGC-----------UGUGCGU-GGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.