miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 5' -62.5 NC_006151.1 + 78318 0.66 0.64535
Target:  5'- cUCGACaGGCUGgaCGaGcGCCCcgGGGCGGg -3'
miRNA:   3'- cAGCUG-CCGGC--GC-C-CGGGuaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 111749 0.66 0.64535
Target:  5'- gGUCGcAgGGgaCGUGGGCCCAgcUGcGAUGAg -3'
miRNA:   3'- -CAGC-UgCCg-GCGCCCGGGU--AC-CUGCU- -5'
29419 5' -62.5 NC_006151.1 + 10223 0.66 0.64535
Target:  5'- --aGGCGGCUGCGGaCgCGgagggGGGCGAg -3'
miRNA:   3'- cagCUGCCGGCGCCcGgGUa----CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 63481 0.66 0.64535
Target:  5'- --gGGCGGCgGCGGcGCCCGaagaaGGugGc -3'
miRNA:   3'- cagCUGCCGgCGCC-CGGGUa----CCugCu -5'
29419 5' -62.5 NC_006151.1 + 141377 0.66 0.64535
Target:  5'- --gGACGGggGCGGGCCCcgGGcaaacaGCGGc -3'
miRNA:   3'- cagCUGCCggCGCCCGGGuaCC------UGCU- -5'
29419 5' -62.5 NC_006151.1 + 6130 0.66 0.64535
Target:  5'- cUCGuggcucCGGCCGC-GGCCgCGaGGACGGc -3'
miRNA:   3'- cAGCu-----GCCGGCGcCCGG-GUaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 19273 0.66 0.64535
Target:  5'- cUCG-UGGCgCGCgGGGCCCAccgGGGCc- -3'
miRNA:   3'- cAGCuGCCG-GCG-CCCGGGUa--CCUGcu -5'
29419 5' -62.5 NC_006151.1 + 21577 0.66 0.64535
Target:  5'- -cCGAgGGCCGCgcgGGGUCgAUGGcguACGGc -3'
miRNA:   3'- caGCUgCCGGCG---CCCGGgUACC---UGCU- -5'
29419 5' -62.5 NC_006151.1 + 56494 0.66 0.64535
Target:  5'- -cUGuCGGCCcccCGGGCCCcgcccgucGUGGACGc -3'
miRNA:   3'- caGCuGCCGGc--GCCCGGG--------UACCUGCu -5'
29419 5' -62.5 NC_006151.1 + 99693 0.66 0.635569
Target:  5'- -cCGACGgcGCCGgGGagacGCCCAUGGAgGc -3'
miRNA:   3'- caGCUGC--CGGCgCC----CGGGUACCUgCu -5'
29419 5' -62.5 NC_006151.1 + 92579 0.66 0.635569
Target:  5'- --gGAgGGCCGCGagguGGCCCccgaGGACGu -3'
miRNA:   3'- cagCUgCCGGCGC----CCGGGua--CCUGCu -5'
29419 5' -62.5 NC_006151.1 + 132620 0.66 0.635569
Target:  5'- gGUCGACGcucgcguccGCCGuCGGcGCCCGgaccUGGGCc- -3'
miRNA:   3'- -CAGCUGC---------CGGC-GCC-CGGGU----ACCUGcu -5'
29419 5' -62.5 NC_006151.1 + 72810 0.66 0.635569
Target:  5'- cUCGACGaGCuCGcCGGcGCCCAcGGGCc- -3'
miRNA:   3'- cAGCUGC-CG-GC-GCC-CGGGUaCCUGcu -5'
29419 5' -62.5 NC_006151.1 + 90272 0.66 0.634591
Target:  5'- --aGACGGCgGCGccgacgagcuggaGGCCCAUgcacgcggGGAUGAa -3'
miRNA:   3'- cagCUGCCGgCGC-------------CCGGGUA--------CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 35477 0.66 0.634591
Target:  5'- -cCGGCGGCCGCcaucuuGGGCCgggCAUGcaaagcaGACGGc -3'
miRNA:   3'- caGCUGCCGGCG------CCCGG---GUAC-------CUGCU- -5'
29419 5' -62.5 NC_006151.1 + 128410 0.66 0.626764
Target:  5'- -aCGGCGGCCGUGaGGCCgCAcacgccgcucuuccaGGGCGu -3'
miRNA:   3'- caGCUGCCGGCGC-CCGG-GUa--------------CCUGCu -5'
29419 5' -62.5 NC_006151.1 + 81693 0.66 0.625786
Target:  5'- -gCGACGGUcgcccgCGCGaGGUCCAgccgGGGCGc -3'
miRNA:   3'- caGCUGCCG------GCGC-CCGGGUa---CCUGCu -5'
29419 5' -62.5 NC_006151.1 + 83565 0.66 0.625786
Target:  5'- --gGGCGGgcccucgaCCGCGGGCCCGaagagcgGGACc- -3'
miRNA:   3'- cagCUGCC--------GGCGCCCGGGUa------CCUGcu -5'
29419 5' -62.5 NC_006151.1 + 98331 0.66 0.625786
Target:  5'- uUC-AUGGCCGCGGGCcgcgagacgcCCGcGGGCGu -3'
miRNA:   3'- cAGcUGCCGGCGCCCG----------GGUaCCUGCu -5'
29419 5' -62.5 NC_006151.1 + 46722 0.66 0.616007
Target:  5'- cUCGGgGGCCGgGgccGGCCCggGGucgGCGAa -3'
miRNA:   3'- cAGCUgCCGGCgC---CCGGGuaCC---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.