miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29420 3' -58.2 NC_006151.1 + 23026 0.66 0.791187
Target:  5'- ---gUGGUGGAGGcggcgaagaaGCgGGCGgCCGCGg -3'
miRNA:   3'- aaagACCACCUCU----------UG-CCGCgGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 5856 0.66 0.791187
Target:  5'- ----cGGaGGGGGACGaGCGCCCGgGg -3'
miRNA:   3'- aaagaCCaCCUCUUGC-CGCGGGCgUg -5'
29420 3' -58.2 NC_006151.1 + 110868 0.66 0.790273
Target:  5'- --gCUGGUGGcGAACaugggcuGGCGCUC-CACg -3'
miRNA:   3'- aaaGACCACCuCUUG-------CCGCGGGcGUG- -5'
29420 3' -58.2 NC_006151.1 + 106453 0.66 0.78198
Target:  5'- cUUCUcGGagacGGAGcuGugGGCGCCCuggGCGCa -3'
miRNA:   3'- aAAGA-CCa---CCUC--UugCCGCGGG---CGUG- -5'
29420 3' -58.2 NC_006151.1 + 128259 0.66 0.772637
Target:  5'- ---gUGGUGGA-AGCGGCacuGCgCGCGCa -3'
miRNA:   3'- aaagACCACCUcUUGCCG---CGgGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 77928 0.66 0.772637
Target:  5'- ---gUGGUGGuGAAgGGCGggCGCGCg -3'
miRNA:   3'- aaagACCACCuCUUgCCGCggGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 91149 0.66 0.76697
Target:  5'- --cCUGGgggcGcGAGAGCgucaggcucacgucgGGCGCCCGCGa -3'
miRNA:   3'- aaaGACCa---C-CUCUUG---------------CCGCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 10883 0.66 0.763168
Target:  5'- --cUUGGUgccGGAGAAaagggGGUGCCgGCGCg -3'
miRNA:   3'- aaaGACCA---CCUCUUg----CCGCGGgCGUG- -5'
29420 3' -58.2 NC_006151.1 + 120582 0.66 0.763168
Target:  5'- cUUCUcGGUGGAcuACGGCGCCauCAa -3'
miRNA:   3'- aAAGA-CCACCUcuUGCCGCGGgcGUg -5'
29420 3' -58.2 NC_006151.1 + 727 0.66 0.763168
Target:  5'- -gUCcgcgGGcGGGGGcuuccgcuccGCGGCGCCCGCc- -3'
miRNA:   3'- aaAGa---CCaCCUCU----------UGCCGCGGGCGug -5'
29420 3' -58.2 NC_006151.1 + 56592 0.66 0.753581
Target:  5'- --gCUGGUGcGGAcgcgccccgGCGGCGCgcucaCCGCGCc -3'
miRNA:   3'- aaaGACCACcUCU---------UGCCGCG-----GGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 111118 0.66 0.753581
Target:  5'- ----cGGcGGGGAGCGcGCGUCUGUGCg -3'
miRNA:   3'- aaagaCCaCCUCUUGC-CGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 138173 0.66 0.753581
Target:  5'- cUUCgUGGcGGAcguGGccAUGGCGCCCGUGCu -3'
miRNA:   3'- aAAG-ACCaCCU---CU--UGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 99088 0.66 0.753581
Target:  5'- -----cGUGGc--GCGGCGCCUGCGCa -3'
miRNA:   3'- aaagacCACCucuUGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 90736 0.66 0.752616
Target:  5'- ----cGGUGGc-GGCGGCGCCCucgggggcggcggGCACg -3'
miRNA:   3'- aaagaCCACCucUUGCCGCGGG-------------CGUG- -5'
29420 3' -58.2 NC_006151.1 + 19878 0.66 0.752616
Target:  5'- ----cGGUGGAGAGCGccagggccagcaGCGCCaggagcugcgcggCGCGCa -3'
miRNA:   3'- aaagaCCACCUCUUGC------------CGCGG-------------GCGUG- -5'
29420 3' -58.2 NC_006151.1 + 31616 0.67 0.743887
Target:  5'- --cCUGGgcGGGGAuGCcGCGCCgGCACg -3'
miRNA:   3'- aaaGACCa-CCUCU-UGcCGCGGgCGUG- -5'
29420 3' -58.2 NC_006151.1 + 119759 0.67 0.743887
Target:  5'- -cUCUGGcGGAcguGGcCGGCGCgCGCAUc -3'
miRNA:   3'- aaAGACCaCCU---CUuGCCGCGgGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 104901 0.67 0.734094
Target:  5'- ---gUGGUGGAc-GCGGCGgCgGCGCg -3'
miRNA:   3'- aaagACCACCUcuUGCCGCgGgCGUG- -5'
29420 3' -58.2 NC_006151.1 + 40557 0.67 0.734094
Target:  5'- ---gUGGUGGAagcGGcgGCGGCGgCCGCGg -3'
miRNA:   3'- aaagACCACCU---CU--UGCCGCgGGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.