miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29421 3' -61.2 NC_006151.1 + 137263 0.66 0.709672
Target:  5'- ----cUCGCgCGCCcgGUGCCCGCgggcacGCUCg -3'
miRNA:   3'- ggucaAGCG-GCGG--CACGGGCG------CGAGa -5'
29421 3' -61.2 NC_006151.1 + 130903 0.66 0.709672
Target:  5'- gCGGccgUCGCCGUCGUcgguggccggGCCCGCGg--- -3'
miRNA:   3'- gGUCa--AGCGGCGGCA----------CGGGCGCgaga -5'
29421 3' -61.2 NC_006151.1 + 88719 0.66 0.709672
Target:  5'- cUCGGUcucggCGuCCGCCGcgGCCaCGCGCa-- -3'
miRNA:   3'- -GGUCAa----GC-GGCGGCa-CGG-GCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 48697 0.66 0.709672
Target:  5'- gCCGGcccgacccucCGCCGCCGcccgGCCCGCGa--- -3'
miRNA:   3'- -GGUCaa--------GCGGCGGCa---CGGGCGCgaga -5'
29421 3' -61.2 NC_006151.1 + 96382 0.66 0.709672
Target:  5'- uCCAcg-CGCgCGCgGUGCCgGCGCa-- -3'
miRNA:   3'- -GGUcaaGCG-GCGgCACGGgCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 38520 0.66 0.708709
Target:  5'- gCCAGcuccccCGCCGCCG-GCCCggacccaGCGCcCg -3'
miRNA:   3'- -GGUCaa----GCGGCGGCaCGGG-------CGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 39305 0.66 0.706779
Target:  5'- cUCGGcUUCGCCGgCGccguggaguaccucUGCUCGCgGCUCg -3'
miRNA:   3'- -GGUC-AAGCGGCgGC--------------ACGGGCG-CGAGa -5'
29421 3' -61.2 NC_006151.1 + 118745 0.66 0.700009
Target:  5'- gCUGGgcccgGCgGCCGUGCCaCGCGCg-- -3'
miRNA:   3'- -GGUCaag--CGgCGGCACGG-GCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 105720 0.66 0.700009
Target:  5'- gCCucgaCGgCGCCGUGCgCGCGC-CUg -3'
miRNA:   3'- -GGucaaGCgGCGGCACGgGCGCGaGA- -5'
29421 3' -61.2 NC_006151.1 + 122501 0.66 0.700009
Target:  5'- aCGGcgCGCCGgCGcGCggaCGCGCUCc -3'
miRNA:   3'- gGUCaaGCGGCgGCaCGg--GCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 2476 0.66 0.700009
Target:  5'- gCGGUUgGCCGCgCgGUGCCCGaagGCg-- -3'
miRNA:   3'- gGUCAAgCGGCG-G-CACGGGCg--CGaga -5'
29421 3' -61.2 NC_006151.1 + 77289 0.66 0.700009
Target:  5'- cCCAuuugccgCGCCGCgUGUGCCCGcCGC-Ca -3'
miRNA:   3'- -GGUcaa----GCGGCG-GCACGGGC-GCGaGa -5'
29421 3' -61.2 NC_006151.1 + 117592 0.66 0.696128
Target:  5'- gCCGcGUggCGCCGCCGcaguagaccguggGCUCGCGCg-- -3'
miRNA:   3'- -GGU-CAa-GCGGCGGCa------------CGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 131782 0.66 0.690293
Target:  5'- gCCGcGggCGCCGCCGUcGUCaGCGCg-- -3'
miRNA:   3'- -GGU-CaaGCGGCGGCA-CGGgCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 90983 0.66 0.690293
Target:  5'- cCCugg-CGCCGCUG-GCUggCGCGCUCc -3'
miRNA:   3'- -GGucaaGCGGCGGCaCGG--GCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 137409 0.66 0.690293
Target:  5'- gCCGGggggcgcccUCGCCGCCGccgcgggGUCCGC-CUCc -3'
miRNA:   3'- -GGUCa--------AGCGGCGGCa------CGGGCGcGAGa -5'
29421 3' -61.2 NC_006151.1 + 38267 0.66 0.690293
Target:  5'- cCCGGccaaCGUgGCCGcgGCCCG-GCUCg -3'
miRNA:   3'- -GGUCaa--GCGgCGGCa-CGGGCgCGAGa -5'
29421 3' -61.2 NC_006151.1 + 48590 0.66 0.680531
Target:  5'- cCCGGggugCGCCucGUCGUGCCUGcCGC-Cg -3'
miRNA:   3'- -GGUCaa--GCGG--CGGCACGGGC-GCGaGa -5'
29421 3' -61.2 NC_006151.1 + 137661 0.66 0.680531
Target:  5'- cCCGGcggacgagCGcCCGCCGUGCggcugCCGCGC-Ca -3'
miRNA:   3'- -GGUCaa------GC-GGCGGCACG-----GGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 120330 0.66 0.680531
Target:  5'- cUCGGa-CGCCGCgCGcGCCCGCGUg-- -3'
miRNA:   3'- -GGUCaaGCGGCG-GCaCGGGCGCGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.