miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 113063 0.66 0.912495
Target:  5'- gCGAGGaCGACGCGUACgaGCgcgCGGcCGu -3'
miRNA:   3'- -GCUCCaGUUGUGCGUGg-CGa--GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 103908 0.66 0.912495
Target:  5'- gGAGGUgGcGCGCGCgGCCGCcgUGGAgGa -3'
miRNA:   3'- gCUCCAgU-UGUGCG-UGGCGa-GCCUgU- -5'
29422 3' -56.2 NC_006151.1 + 96853 0.66 0.912495
Target:  5'- gCGGGGaaAcCGCGC-CCGC-CGGGCGc -3'
miRNA:   3'- -GCUCCagUuGUGCGuGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 65647 0.66 0.912495
Target:  5'- uGAGGUCGAggguCGCGUACUGCaggUCGuccGGCAc -3'
miRNA:   3'- gCUCCAGUU----GUGCGUGGCG---AGC---CUGU- -5'
29422 3' -56.2 NC_006151.1 + 55409 0.66 0.912495
Target:  5'- gCGAGca-GGCccuGCGCGCCGCgcaggCGGGCGc -3'
miRNA:   3'- -GCUCcagUUG---UGCGUGGCGa----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 141559 0.66 0.912495
Target:  5'- aGAGGgucCGGCGCGauccucCGCCGCUccucccccCGGGCGa -3'
miRNA:   3'- gCUCCa--GUUGUGC------GUGGCGA--------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 122921 0.66 0.910712
Target:  5'- uCGAGGgcggcgaCGACGCggacgccgacggcgGCGCCGCggggggcgCGGACGc -3'
miRNA:   3'- -GCUCCa------GUUGUG--------------CGUGGCGa-------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 138730 0.66 0.910712
Target:  5'- -cGGGUCGuguACGCGCGCCGCgacugCcgcgccuaccugugGGACGu -3'
miRNA:   3'- gcUCCAGU---UGUGCGUGGCGa----G--------------CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 53627 0.66 0.910113
Target:  5'- -cAGGUCGcgcuucugcagcuCGCGCACCGUcggCGGGCu -3'
miRNA:   3'- gcUCCAGUu------------GUGCGUGGCGa--GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 21588 0.66 0.906469
Target:  5'- gCGGGGUCgAugGCGUACgGCguggCGG-CGg -3'
miRNA:   3'- -GCUCCAG-UugUGCGUGgCGa---GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 73383 0.66 0.906469
Target:  5'- aCGGGGgcgcgCAGCGCGgcCGCCGCguacgCGGcCGu -3'
miRNA:   3'- -GCUCCa----GUUGUGC--GUGGCGa----GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 89661 0.66 0.906469
Target:  5'- aGAGGU-GGCGCGU---GCUCGGGCGc -3'
miRNA:   3'- gCUCCAgUUGUGCGuggCGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 128420 0.66 0.906469
Target:  5'- uGAGG-CcGCACaCGCCGCUCuuccaGGGCGu -3'
miRNA:   3'- gCUCCaGuUGUGcGUGGCGAG-----CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 5620 0.66 0.906469
Target:  5'- gGAGGgggCGcCGC-CGCCGC-CGGGCGc -3'
miRNA:   3'- gCUCCa--GUuGUGcGUGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 57232 0.66 0.906469
Target:  5'- uCGcAGG-CGGCGCGCGCgGcCUCGG-CGu -3'
miRNA:   3'- -GC-UCCaGUUGUGCGUGgC-GAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 123002 0.66 0.906469
Target:  5'- aCGGGccCGGCGCGCccCCGCcggCGGACGc -3'
miRNA:   3'- -GCUCcaGUUGUGCGu-GGCGa--GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 33935 0.66 0.906469
Target:  5'- uCGAGGcCcGCGCGCcCCggggGCUCGGGg- -3'
miRNA:   3'- -GCUCCaGuUGUGCGuGG----CGAGCCUgu -5'
29422 3' -56.2 NC_006151.1 + 71072 0.66 0.906469
Target:  5'- cCGuGGUCuucuaccacCACgGCGCCGCgggcgCGGGCGc -3'
miRNA:   3'- -GCuCCAGuu-------GUG-CGUGGCGa----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 122373 0.66 0.906469
Target:  5'- aCGGGcUCGACgagGCGCGCCGC--GGGCGc -3'
miRNA:   3'- -GCUCcAGUUG---UGCGUGGCGagCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 68076 0.66 0.900209
Target:  5'- -cAGGUCGGCGgGCAgCGcCUCGaGGCu -3'
miRNA:   3'- gcUCCAGUUGUgCGUgGC-GAGC-CUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.