miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 5' -65.1 NC_006151.1 + 113416 0.66 0.484725
Target:  5'- cGCGCGcacuGGcuGGCGCUgcgccgcuuccgGCGCGGCGUGc- -3'
miRNA:   3'- cUGCGC----CC--CCGCGA------------CGCGCCGCACua -5'
29422 5' -65.1 NC_006151.1 + 50462 0.66 0.484725
Target:  5'- -cCGCGGGcgcucGCGCcaGCGCGGCGcGAc -3'
miRNA:   3'- cuGCGCCCc----CGCGa-CGCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 82425 0.66 0.475686
Target:  5'- aGAgGCGcGGGCGCUcGCGCgGGCGcUGc- -3'
miRNA:   3'- -CUgCGCcCCCGCGA-CGCG-CCGC-ACua -5'
29422 5' -65.1 NC_006151.1 + 734 0.66 0.475686
Target:  5'- --gGCGGGGGCuuccGCUcCGCGGCGc--- -3'
miRNA:   3'- cugCGCCCCCG----CGAcGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 3118 0.66 0.475686
Target:  5'- cGGCGCGGGucccaggccgGGCGCgggGCGCccucGGCGg--- -3'
miRNA:   3'- -CUGCGCCC----------CCGCGa--CGCG----CCGCacua -5'
29422 5' -65.1 NC_006151.1 + 118157 0.66 0.475686
Target:  5'- --gGCGGuGGCGCcgcuggUGCGCGGCcUGAc -3'
miRNA:   3'- cugCGCCcCCGCG------ACGCGCCGcACUa -5'
29422 5' -65.1 NC_006151.1 + 125539 0.66 0.475686
Target:  5'- uGCGUGGaGGUGC-GCgGCGGCGUGu- -3'
miRNA:   3'- cUGCGCCcCCGCGaCG-CGCCGCACua -5'
29422 5' -65.1 NC_006151.1 + 17395 0.66 0.475686
Target:  5'- cACGaCGGGGcGCGUggcGCGCGGCa---- -3'
miRNA:   3'- cUGC-GCCCC-CGCGa--CGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 136993 0.66 0.475686
Target:  5'- --gGCGGcGGGCGCgcGCGCacGGCGcUGGg -3'
miRNA:   3'- cugCGCC-CCCGCGa-CGCG--CCGC-ACUa -5'
29422 5' -65.1 NC_006151.1 + 5083 0.66 0.466732
Target:  5'- -cCGCGGGGcCGCggcggGCGCcGGCG-GAg -3'
miRNA:   3'- cuGCGCCCCcGCGa----CGCG-CCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 44393 0.66 0.463174
Target:  5'- -cCGCGGGGGCGCcgaggagggagggGCGC-GUGUGc- -3'
miRNA:   3'- cuGCGCCCCCGCGa------------CGCGcCGCACua -5'
29422 5' -65.1 NC_006151.1 + 104062 0.66 0.457865
Target:  5'- cGCGCGGccgacgcGGCGCUGCGCcGCGccGAg -3'
miRNA:   3'- cUGCGCCc------CCGCGACGCGcCGCa-CUa -5'
29422 5' -65.1 NC_006151.1 + 33076 0.66 0.457865
Target:  5'- aGACGgaGGGGGCGaggGCG-GGCGgugGAg -3'
miRNA:   3'- -CUGCg-CCCCCGCga-CGCgCCGCa--CUa -5'
29422 5' -65.1 NC_006151.1 + 21313 0.66 0.457865
Target:  5'- --aGCGGuGGCGCgagacgcccgGCGCGGCGggGGUc -3'
miRNA:   3'- cugCGCCcCCGCGa---------CGCGCCGCa-CUA- -5'
29422 5' -65.1 NC_006151.1 + 62094 0.66 0.457865
Target:  5'- cGGCGCGGucGGC-CUggGCGCGGcCGUGGUc -3'
miRNA:   3'- -CUGCGCCc-CCGcGA--CGCGCC-GCACUA- -5'
29422 5' -65.1 NC_006151.1 + 122488 0.66 0.457865
Target:  5'- gGACGCGGGcgagacGGCGCgccgGCGC-GCG-GAc -3'
miRNA:   3'- -CUGCGCCC------CCGCGa---CGCGcCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 39269 0.66 0.457865
Target:  5'- aACGCccaGGGGGUGCUGCugcucuCGGCGcGGg -3'
miRNA:   3'- cUGCG---CCCCCGCGACGc-----GCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 105031 0.66 0.449089
Target:  5'- uGACGCaGGcGGCGCUGCugcuCGGCGc--- -3'
miRNA:   3'- -CUGCGcCC-CCGCGACGc---GCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 70092 0.66 0.449089
Target:  5'- cGCGUGGGcGGCGaaggGCGCGaGCG-GGUc -3'
miRNA:   3'- cUGCGCCC-CCGCga--CGCGC-CGCaCUA- -5'
29422 5' -65.1 NC_006151.1 + 97350 0.66 0.449089
Target:  5'- uACGCGGGGaaggccgcggcgGCgGCggGCGCGGCGgGGg -3'
miRNA:   3'- cUGCGCCCC------------CG-CGa-CGCGCCGCaCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.