miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 3' -56.5 NC_006151.1 + 137330 0.66 0.90021
Target:  5'- aCGCGCUCgcgcUGCUCUUcccCGAg-GCCGa -3'
miRNA:   3'- -GCGCGAGaa--ACGGGAGu--GCUagCGGC- -5'
29423 3' -56.5 NC_006151.1 + 113942 0.66 0.90021
Target:  5'- aCGCGCccuaCUUUGCCUaCGCGGcCGCg- -3'
miRNA:   3'- -GCGCGa---GAAACGGGaGUGCUaGCGgc -5'
29423 3' -56.5 NC_006151.1 + 107102 0.66 0.90021
Target:  5'- gCGUGCUCUgggcgccGCCCgagccgcCGCGA-CGCCc -3'
miRNA:   3'- -GCGCGAGAaa-----CGGGa------GUGCUaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 97254 0.66 0.90021
Target:  5'- cCGCGCaugUCggggGCCCaCACGGgcagCGCCu -3'
miRNA:   3'- -GCGCG---AGaaa-CGGGaGUGCUa---GCGGc -5'
29423 3' -56.5 NC_006151.1 + 81355 0.66 0.90021
Target:  5'- cCGCGCcCgggGCCCcgGCGggCGCCa -3'
miRNA:   3'- -GCGCGaGaaaCGGGagUGCuaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 53017 0.66 0.89372
Target:  5'- gGCGCguccaGCCCUgCAgGuUCGCCGg -3'
miRNA:   3'- gCGCGagaaaCGGGA-GUgCuAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 86423 0.66 0.89372
Target:  5'- gGCG-UCccUGUCCUCGCGG-CGCCu -3'
miRNA:   3'- gCGCgAGaaACGGGAGUGCUaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 91938 0.66 0.89372
Target:  5'- aCGcCGC-CggggGUCCUCACGccaAUCGCCa -3'
miRNA:   3'- -GC-GCGaGaaa-CGGGAGUGC---UAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 136653 0.66 0.89372
Target:  5'- gGCGCUCgc--CCCUCggggagcgcGCGGcCGCCGc -3'
miRNA:   3'- gCGCGAGaaacGGGAG---------UGCUaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 7656 0.66 0.89372
Target:  5'- uCGCGCUCggcgcGCgCUC-CGAgggCGCCc -3'
miRNA:   3'- -GCGCGAGaaa--CGgGAGuGCUa--GCGGc -5'
29423 3' -56.5 NC_006151.1 + 28136 0.66 0.89372
Target:  5'- gCGCGCUCcgcGCCuCUCcCGGUCGauccCCGu -3'
miRNA:   3'- -GCGCGAGaaaCGG-GAGuGCUAGC----GGC- -5'
29423 3' -56.5 NC_006151.1 + 134415 0.66 0.89372
Target:  5'- cCGCGCgagCUggugcUGCCCccCGgGggCGCCGa -3'
miRNA:   3'- -GCGCGa--GAa----ACGGGa-GUgCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 137087 0.66 0.89372
Target:  5'- gGCGC-Cag-GCCUUCGCGGUgcugGCCGg -3'
miRNA:   3'- gCGCGaGaaaCGGGAGUGCUAg---CGGC- -5'
29423 3' -56.5 NC_006151.1 + 111859 0.66 0.892395
Target:  5'- gGCGCUCggggucgcagGCCguCUCGCcGUCGCUGc -3'
miRNA:   3'- gCGCGAGaaa-------CGG--GAGUGcUAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 25415 0.66 0.887003
Target:  5'- gGCGC-CgccGCCC-CACGcgCGCCc -3'
miRNA:   3'- gCGCGaGaaaCGGGaGUGCuaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 120340 0.66 0.887003
Target:  5'- gCGCGCgcccgCgugGCCgggCUCGCGggCGCCu -3'
miRNA:   3'- -GCGCGa----GaaaCGG---GAGUGCuaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 30920 0.66 0.887003
Target:  5'- cCGCGggCg--GCCCgCGCGgAUCGCCc -3'
miRNA:   3'- -GCGCgaGaaaCGGGaGUGC-UAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 58722 0.66 0.887003
Target:  5'- aGCGCcCccgUGCCgCUCGCGucgcgcagCGCCGc -3'
miRNA:   3'- gCGCGaGaa-ACGG-GAGUGCua------GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 84733 0.66 0.887003
Target:  5'- gGCGCUCguggUGCUCgaggagacgGCGcgCGCCGc -3'
miRNA:   3'- gCGCGAGaa--ACGGGag-------UGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 122541 0.66 0.880063
Target:  5'- aCGUGUUCcg-GCCCgccUCGCGG-CGCCu -3'
miRNA:   3'- -GCGCGAGaaaCGGG---AGUGCUaGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.