miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 5' -58.9 NC_006151.1 + 52161 0.66 0.788402
Target:  5'- gUCCACGugCGUCucgaAGGGCgCGcGCGCg -3'
miRNA:   3'- aAGGUGCugGCGG----UCUUGgGC-UGCGa -5'
29423 5' -58.9 NC_006151.1 + 63999 0.66 0.788402
Target:  5'- gUCUGCGugCggugcggcGCCAGGcGCCCGAuCGCg -3'
miRNA:   3'- aAGGUGCugG--------CGGUCU-UGGGCU-GCGa -5'
29423 5' -58.9 NC_006151.1 + 87290 0.66 0.788402
Target:  5'- cUgCACGcGCCGCCccccucGCCCGugGCg -3'
miRNA:   3'- aAgGUGC-UGGCGGucu---UGGGCugCGa -5'
29423 5' -58.9 NC_006151.1 + 46564 0.66 0.788402
Target:  5'- -cCCagGCGcuccCCGCgCAGGGCCCGACGg- -3'
miRNA:   3'- aaGG--UGCu---GGCG-GUCUUGGGCUGCga -5'
29423 5' -58.9 NC_006151.1 + 57523 0.66 0.788402
Target:  5'- -gCgGCGGCCGCC----UCCGGCGCg -3'
miRNA:   3'- aaGgUGCUGGCGGucuuGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 77707 0.66 0.788402
Target:  5'- gUgCACGACCGCCAGcagGACCgCGuccuggaGCUc -3'
miRNA:   3'- aAgGUGCUGGCGGUC---UUGG-GCug-----CGA- -5'
29423 5' -58.9 NC_006151.1 + 106663 0.66 0.788402
Target:  5'- --gCACGugCGCgAG-GCCgCGGCGCUc -3'
miRNA:   3'- aagGUGCugGCGgUCuUGG-GCUGCGA- -5'
29423 5' -58.9 NC_006151.1 + 137299 0.66 0.788402
Target:  5'- -gCCAUGcgcggguuccGCCGCgCGGuGCUCGACGCg -3'
miRNA:   3'- aaGGUGC----------UGGCG-GUCuUGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 2113 0.66 0.788402
Target:  5'- -gCCGCGgggccggccgucGCCGCCGcGGACgCCGACGa- -3'
miRNA:   3'- aaGGUGC------------UGGCGGU-CUUG-GGCUGCga -5'
29423 5' -58.9 NC_006151.1 + 2152 0.66 0.788402
Target:  5'- cUCCACaGAguccccguccUCGCCGGGGccggcCCCGGCGCc -3'
miRNA:   3'- aAGGUG-CU----------GGCGGUCUU-----GGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 11328 0.66 0.788402
Target:  5'- -aCCGCGcgggcgauACCGCgCGGGccGCCCGcggGCGCUa -3'
miRNA:   3'- aaGGUGC--------UGGCG-GUCU--UGGGC---UGCGA- -5'
29423 5' -58.9 NC_006151.1 + 27343 0.66 0.788402
Target:  5'- -cCCGgGACCggggucguggGCCGGGGCCCGG-GCg -3'
miRNA:   3'- aaGGUgCUGG----------CGGUCUUGGGCUgCGa -5'
29423 5' -58.9 NC_006151.1 + 103729 0.66 0.78295
Target:  5'- cUUCCugGAgCCGCUggcgcggcagugcgaGGAgcgcGCCgCGGCGCUg -3'
miRNA:   3'- -AAGGugCU-GGCGG---------------UCU----UGG-GCUGCGA- -5'
29423 5' -58.9 NC_006151.1 + 5915 0.66 0.779289
Target:  5'- -gCCGggguCGGCgGCCGGGGCCCGGaGCc -3'
miRNA:   3'- aaGGU----GCUGgCGGUCUUGGGCUgCGa -5'
29423 5' -58.9 NC_006151.1 + 79713 0.66 0.779289
Target:  5'- -gCCGCcgGACCGCCGucgcucGGACCCGcCGUc -3'
miRNA:   3'- aaGGUG--CUGGCGGU------CUUGGGCuGCGa -5'
29423 5' -58.9 NC_006151.1 + 128513 0.66 0.779289
Target:  5'- --gCACGAgcaccUCGCCcGAGCCCGAgGCc -3'
miRNA:   3'- aagGUGCU-----GGCGGuCUUGGGCUgCGa -5'
29423 5' -58.9 NC_006151.1 + 65318 0.66 0.779289
Target:  5'- -cCCGCGGCCGUUgaGGAACaCGAgCGCg -3'
miRNA:   3'- aaGGUGCUGGCGG--UCUUGgGCU-GCGa -5'
29423 5' -58.9 NC_006151.1 + 106570 0.66 0.779289
Target:  5'- -cCCGCGGCUGCU----CUCGGCGCUg -3'
miRNA:   3'- aaGGUGCUGGCGGucuuGGGCUGCGA- -5'
29423 5' -58.9 NC_006151.1 + 30919 0.66 0.779289
Target:  5'- -cCCGCGGgcggcCCGCgCGGAucGCCCG-CGCg -3'
miRNA:   3'- aaGGUGCU-----GGCG-GUCU--UGGGCuGCGa -5'
29423 5' -58.9 NC_006151.1 + 37916 0.66 0.77837
Target:  5'- -cCCGCGucccgccgccuucGCCGCCGcGcAGCCCGGcCGCg -3'
miRNA:   3'- aaGGUGC-------------UGGCGGU-C-UUGGGCU-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.