miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29424 3' -65.8 NC_006151.1 + 62574 0.65 0.486917
Target:  5'- gGCCCCCGGgucgGGCGacgacgaguuugacGACGGCGaCGagguCGUGu -3'
miRNA:   3'- aCGGGGGCC----UCGU--------------CUGCCGC-GC----GCGC- -5'
29424 3' -65.8 NC_006151.1 + 38579 0.65 0.486917
Target:  5'- cGCgCCCGGGGCccgccgccccggGGACGGCgaggaggacgagggGCucuccgGCGCGg -3'
miRNA:   3'- aCGgGGGCCUCG------------UCUGCCG--------------CG------CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 22859 0.66 0.480664
Target:  5'- aGCCCa-GGAGCAgGGCGGgGCuGC-CGg -3'
miRNA:   3'- aCGGGggCCUCGU-CUGCCgCG-CGcGC- -5'
29424 3' -65.8 NC_006151.1 + 39334 0.66 0.480664
Target:  5'- cUGCUCgCGGcuCGGcGCGGCGCgGCGCc -3'
miRNA:   3'- -ACGGGgGCCucGUC-UGCCGCG-CGCGc -5'
29424 3' -65.8 NC_006151.1 + 57608 0.66 0.480664
Target:  5'- cGgCCUCGGccgcGGCcgccucGACGGCGCGCGa- -3'
miRNA:   3'- aCgGGGGCC----UCGu-----CUGCCGCGCGCgc -5'
29424 3' -65.8 NC_006151.1 + 59956 0.66 0.480664
Target:  5'- aGCCCUCGaGcgccacccGCAGGCGGUuguucuccagcaGCGCGUGc -3'
miRNA:   3'- aCGGGGGC-Cu-------CGUCUGCCG------------CGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 62035 0.66 0.480664
Target:  5'- aGCCCCCcgcugcgccGCGuGGCGGUgcacGCGCGCGc -3'
miRNA:   3'- aCGGGGGccu------CGU-CUGCCG----CGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 92670 0.66 0.480664
Target:  5'- cUGCUgCCGGcGGCcggGGACGcGCGCucgccGCGCGc -3'
miRNA:   3'- -ACGGgGGCC-UCG---UCUGC-CGCG-----CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 97500 0.66 0.480664
Target:  5'- aGCgCCUCGcGGCGG-UGGCGCuGCGUGu -3'
miRNA:   3'- aCG-GGGGCcUCGUCuGCCGCG-CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 75117 0.66 0.480664
Target:  5'- cGCCagcagCUGGucGGCGGcCGGCG-GCGCGg -3'
miRNA:   3'- aCGGg----GGCC--UCGUCuGCCGCgCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 50076 0.66 0.480664
Target:  5'- gUGCCgCa-GAGCccacGCGGCGCGCGUa -3'
miRNA:   3'- -ACGGgGgcCUCGuc--UGCCGCGCGCGc -5'
29424 3' -65.8 NC_006151.1 + 81773 0.66 0.480664
Target:  5'- cGCCaCCgGGAcGCGcuCGGCGCGCcCGu -3'
miRNA:   3'- aCGG-GGgCCU-CGUcuGCCGCGCGcGC- -5'
29424 3' -65.8 NC_006151.1 + 102219 0.66 0.480664
Target:  5'- cGCaCCCaCGGGG-AGGCGcCGUGCGCc -3'
miRNA:   3'- aCG-GGG-GCCUCgUCUGCcGCGCGCGc -5'
29424 3' -65.8 NC_006151.1 + 113100 0.66 0.480664
Target:  5'- cGCCaCCgGGGGCGGggccGCGGaCGCGgaCGCc -3'
miRNA:   3'- aCGG-GGgCCUCGUC----UGCC-GCGC--GCGc -5'
29424 3' -65.8 NC_006151.1 + 99319 0.66 0.480664
Target:  5'- cGCgCCCCGccuGaCGGACGcGCaGCGCGCc -3'
miRNA:   3'- aCG-GGGGCcu-C-GUCUGC-CG-CGCGCGc -5'
29424 3' -65.8 NC_006151.1 + 60725 0.66 0.479773
Target:  5'- gGCCCCgaggugcCGGAGCAcgaggcagcGGCGGCuCGCGa- -3'
miRNA:   3'- aCGGGG-------GCCUCGU---------CUGCCGcGCGCgc -5'
29424 3' -65.8 NC_006151.1 + 137347 0.66 0.479773
Target:  5'- -uUCCCCGaGGCcGACGGCGacugggcCGCGCa -3'
miRNA:   3'- acGGGGGCcUCGuCUGCCGC-------GCGCGc -5'
29424 3' -65.8 NC_006151.1 + 60378 0.66 0.477108
Target:  5'- aGCCCgaCGGugaccacggugguGUAGACGaGgGCGCGCa -3'
miRNA:   3'- aCGGGg-GCCu------------CGUCUGC-CgCGCGCGc -5'
29424 3' -65.8 NC_006151.1 + 104884 0.66 0.475335
Target:  5'- cGCgCCUgcugcgcgaggugguGGAcGCGG-CGGCgGCGCGCGa -3'
miRNA:   3'- aCGgGGG---------------CCU-CGUCuGCCG-CGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 84628 0.66 0.475335
Target:  5'- gGCCgCCgCGGcGCuGGACaacgccauggccgcgGGCGCGCGCc -3'
miRNA:   3'- aCGG-GG-GCCuCG-UCUG---------------CCGCGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.