miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29424 5' -54 NC_006151.1 + 104659 0.66 0.966445
Target:  5'- gCCGCcgaCGCGGCGCgcgcgCU-CGACGa- -3'
miRNA:   3'- gGGCGaa-GCGCUGCGa----GAuGCUGUac -5'
29424 5' -54 NC_006151.1 + 98860 0.66 0.966445
Target:  5'- gCCGCUgacgCGCG-CGCUCUuugcccucACGAUc-- -3'
miRNA:   3'- gGGCGAa---GCGCuGCGAGA--------UGCUGuac -5'
29424 5' -54 NC_006151.1 + 69582 0.66 0.966445
Target:  5'- gCCGCgcCGCGACgaGCUCggccgcGCGGCGc- -3'
miRNA:   3'- gGGCGaaGCGCUG--CGAGa-----UGCUGUac -5'
29424 5' -54 NC_006151.1 + 26982 0.66 0.966445
Target:  5'- gCUGCgcagCGgGGCGCUCUGCucgGGCGa- -3'
miRNA:   3'- gGGCGaa--GCgCUGCGAGAUG---CUGUac -5'
29424 5' -54 NC_006151.1 + 68239 0.66 0.963151
Target:  5'- gCCCGCgggCGCGucagguagacGCGCgcgGCGACGg- -3'
miRNA:   3'- -GGGCGaa-GCGC----------UGCGagaUGCUGUac -5'
29424 5' -54 NC_006151.1 + 85350 0.66 0.963151
Target:  5'- gCUCGCcgCGCuGGCGCgcCUGCG-CGUGg -3'
miRNA:   3'- -GGGCGaaGCG-CUGCGa-GAUGCuGUAC- -5'
29424 5' -54 NC_006151.1 + 137277 0.66 0.963151
Target:  5'- gCCCGCgg-GC-ACGCUCgagGCGGCcAUGc -3'
miRNA:   3'- -GGGCGaagCGcUGCGAGa--UGCUG-UAC- -5'
29424 5' -54 NC_006151.1 + 120422 0.66 0.962466
Target:  5'- uCCUGCUgaagcagcaccaCGCGACGCUgUucccccGCGGCAa- -3'
miRNA:   3'- -GGGCGAa-----------GCGCUGCGAgA------UGCUGUac -5'
29424 5' -54 NC_006151.1 + 77689 0.66 0.959638
Target:  5'- -gCGCUcUCGCuGACGCUCgugcACGACc-- -3'
miRNA:   3'- ggGCGA-AGCG-CUGCGAGa---UGCUGuac -5'
29424 5' -54 NC_006151.1 + 69552 0.66 0.959638
Target:  5'- gCCCGC-UCGCcACGUggCUGCGcACcgGg -3'
miRNA:   3'- -GGGCGaAGCGcUGCGa-GAUGC-UGuaC- -5'
29424 5' -54 NC_006151.1 + 112686 0.66 0.95854
Target:  5'- cCCCGCccuggcuggcggacUaCGCGGCGCUgUGCGcCAa- -3'
miRNA:   3'- -GGGCG--------------AaGCGCUGCGAgAUGCuGUac -5'
29424 5' -54 NC_006151.1 + 106877 0.66 0.951935
Target:  5'- cCCUGgc-CGUGACGCUgUGCGACcUGc -3'
miRNA:   3'- -GGGCgaaGCGCUGCGAgAUGCUGuAC- -5'
29424 5' -54 NC_006151.1 + 66347 0.66 0.951935
Target:  5'- -aCGCgaCGCGGCGCUaCUACG-CGg- -3'
miRNA:   3'- ggGCGaaGCGCUGCGA-GAUGCuGUac -5'
29424 5' -54 NC_006151.1 + 38178 0.66 0.951935
Target:  5'- gCCCGCacCGUGGCGCcgcuggugcgCUACaGCGUGg -3'
miRNA:   3'- -GGGCGaaGCGCUGCGa---------GAUGcUGUAC- -5'
29424 5' -54 NC_006151.1 + 122400 0.67 0.947737
Target:  5'- gCgCGCUg-GCGGCGCUCgcCGcCGUGg -3'
miRNA:   3'- -GgGCGAagCGCUGCGAGauGCuGUAC- -5'
29424 5' -54 NC_006151.1 + 5443 0.67 0.947737
Target:  5'- gCCGCgg-GCGACGgUCUcgACGGCGa- -3'
miRNA:   3'- gGGCGaagCGCUGCgAGA--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 67992 0.67 0.947737
Target:  5'- gCCCGCcggcgcCGCGGCcacggGCUCgGCGGCGUc -3'
miRNA:   3'- -GGGCGaa----GCGCUG-----CGAGaUGCUGUAc -5'
29424 5' -54 NC_006151.1 + 92046 0.67 0.947737
Target:  5'- gCCCGCUgccUGCuGCGCcugCUGCG-CAUGc -3'
miRNA:   3'- -GGGCGAa--GCGcUGCGa--GAUGCuGUAC- -5'
29424 5' -54 NC_006151.1 + 72044 0.67 0.947737
Target:  5'- cCCCGCcgCGCaGCGuCUCgGCGGCGc- -3'
miRNA:   3'- -GGGCGaaGCGcUGC-GAGaUGCUGUac -5'
29424 5' -54 NC_006151.1 + 118114 0.67 0.943304
Target:  5'- aCCUGCUggcgcugcUCGUGGCGCgcagCgccgACGACGc- -3'
miRNA:   3'- -GGGCGA--------AGCGCUGCGa---Ga---UGCUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.