miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 5' -64.2 NC_006151.1 + 122474 0.66 0.578989
Target:  5'- -gGCGCCGagGcCGGGGacgcgggCGAGacgGCGCGc -3'
miRNA:   3'- agCGCGGCg-C-GCCCCa------GCUCa--CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 64759 0.66 0.578989
Target:  5'- -gGgGCCaccguGCGCGGGGgcugguugcCGGG-GCGCGa -3'
miRNA:   3'- agCgCGG-----CGCGCCCCa--------GCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 130673 0.66 0.578989
Target:  5'- -aGUGCC-CGCGGGG-CGcG-GCGCa -3'
miRNA:   3'- agCGCGGcGCGCCCCaGCuCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 123108 0.66 0.576127
Target:  5'- cUCGCGgCGCuCGGcGG-CGAgccuggcgcagugcGUGCGCGa -3'
miRNA:   3'- -AGCGCgGCGcGCC-CCaGCU--------------CACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 57474 0.66 0.569462
Target:  5'- cCGCGCCGCgGCGGccUCGcAGgcgacGCGCa -3'
miRNA:   3'- aGCGCGGCG-CGCCccAGC-UCa----CGCGc -5'
29425 5' -64.2 NC_006151.1 + 50369 0.66 0.569462
Target:  5'- cUC-CGCCG-GCGGGGgCGAGa-CGCGg -3'
miRNA:   3'- -AGcGCGGCgCGCCCCaGCUCacGCGC- -5'
29425 5' -64.2 NC_006151.1 + 20169 0.66 0.569462
Target:  5'- cCGgGCCGCGCccGGGUCGcggccGGUagaugcgauuccGCGCGc -3'
miRNA:   3'- aGCgCGGCGCGc-CCCAGC-----UCA------------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 133113 0.66 0.565662
Target:  5'- -aGCGCCGCGUccgucgucggGGGGUUcaugucccaGAGggacucggcggcgGCGCGg -3'
miRNA:   3'- agCGCGGCGCG----------CCCCAG---------CUCa------------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 90098 0.66 0.560921
Target:  5'- cCGCGCCgcaggccgcggcgacGCccaugacgaggcagGCGGGG-CGguAGUGCGCGu -3'
miRNA:   3'- aGCGCGG---------------CG--------------CGCCCCaGC--UCACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 69583 0.66 0.559975
Target:  5'- cCGCGCCGCGaCGaGcUCGGccGCGCGg -3'
miRNA:   3'- aGCGCGGCGC-GCcCcAGCUcaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 14467 0.66 0.559975
Target:  5'- gUUGgGuuGgGCGGGuGggCGGGUGgGCGg -3'
miRNA:   3'- -AGCgCggCgCGCCC-Ca-GCUCACgCGC- -5'
29425 5' -64.2 NC_006151.1 + 15040 0.66 0.559975
Target:  5'- gCGCGUccacggCGCGCGGGGcccCGGcgccuucUGCGCGg -3'
miRNA:   3'- aGCGCG------GCGCGCCCCa--GCUc------ACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 95136 0.66 0.559975
Target:  5'- -gGCGCCGCGCcgccGGGUCGGccauguccauGUccaGCGCc -3'
miRNA:   3'- agCGCGGCGCGc---CCCAGCU----------CA---CGCGc -5'
29425 5' -64.2 NC_006151.1 + 5722 0.66 0.559975
Target:  5'- cUGUGCUggugGCGcCGGGGUCcGAGgccGCGCc -3'
miRNA:   3'- aGCGCGG----CGC-GCCCCAG-CUCa--CGCGc -5'
29425 5' -64.2 NC_006151.1 + 116326 0.66 0.559975
Target:  5'- cCGCGCuCGCGCGGGccCGcG-GCGUa -3'
miRNA:   3'- aGCGCG-GCGCGCCCcaGCuCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 129607 0.66 0.559028
Target:  5'- gCGgGCaCGUGCGcaccagcGGGUCGAGcGCGUc -3'
miRNA:   3'- aGCgCG-GCGCGC-------CCCAGCUCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 140367 0.66 0.550531
Target:  5'- cCGCGUCGUcgaGCGcGGcUCGAGcUGCGUGc -3'
miRNA:   3'- aGCGCGGCG---CGC-CCcAGCUC-ACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 96210 0.66 0.550531
Target:  5'- cCGCGUCGCcgugGCGGcGGccgcggCGAG-GCGCa -3'
miRNA:   3'- aGCGCGGCG----CGCC-CCa-----GCUCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 19637 0.66 0.550531
Target:  5'- cCGuCGCCGCGCGc-GUCGAGggugaaguugGCGCc -3'
miRNA:   3'- aGC-GCGGCGCGCccCAGCUCa---------CGCGc -5'
29425 5' -64.2 NC_006151.1 + 135360 0.66 0.550531
Target:  5'- -aGcCGCCGCGCGuuGGcCGcGUGCGCc -3'
miRNA:   3'- agC-GCGGCGCGCc-CCaGCuCACGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.