miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29426 5' -68.5 NC_006151.1 + 126173 0.65 0.374492
Target:  5'- gGUCGCgGCCuuccuGGCCuaccggcacaucucGCGCCUGCgCCg -3'
miRNA:   3'- -CAGCGgCGGcu---CCGG--------------CGCGGGCG-GGa -5'
29426 5' -68.5 NC_006151.1 + 30703 0.66 0.369218
Target:  5'- --gGgUGUCGGGGCCGgGUUCGCUCUg -3'
miRNA:   3'- cagCgGCGGCUCCGGCgCGGGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 2000 0.66 0.369218
Target:  5'- aGUCcgGCCggGCCGAGGggGCGcCCCGCUCa -3'
miRNA:   3'- -CAG--CGG--CGGCUCCggCGC-GGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 20884 0.66 0.369218
Target:  5'- -gCGCUugggGUCGAGGCgcagcagcuccaCGCGCCCGCUg- -3'
miRNA:   3'- caGCGG----CGGCUCCG------------GCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 41604 0.66 0.369218
Target:  5'- --aGcCCGCCccGGCCGCGCCCcggaaGCCg- -3'
miRNA:   3'- cagC-GGCGGcuCCGGCGCGGG-----CGGga -5'
29426 5' -68.5 NC_006151.1 + 62018 0.66 0.369218
Target:  5'- -gCGCCGCCcuGGCgGCcaGCCC-CCCg -3'
miRNA:   3'- caGCGGCGGcuCCGgCG--CGGGcGGGa -5'
29426 5' -68.5 NC_006151.1 + 69423 0.66 0.369218
Target:  5'- cGUCG-CGCC-AGGCgGCGCcgCCGCCg- -3'
miRNA:   3'- -CAGCgGCGGcUCCGgCGCG--GGCGGga -5'
29426 5' -68.5 NC_006151.1 + 99722 0.66 0.369218
Target:  5'- -gCGCCGaCGAGcGCgGCGCUCGUCg- -3'
miRNA:   3'- caGCGGCgGCUC-CGgCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 109414 0.66 0.369218
Target:  5'- uUCGCgGCC--GGCCGCaccaccGCCgGCCCc -3'
miRNA:   3'- cAGCGgCGGcuCCGGCG------CGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 24970 0.66 0.369218
Target:  5'- -gCGCCGCgGccuGCCGCGUCaGCCCc -3'
miRNA:   3'- caGCGGCGgCuc-CGGCGCGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 72885 0.66 0.369218
Target:  5'- -gUGUCGgCGAuGaGCCGCGCCaGCCCc -3'
miRNA:   3'- caGCGGCgGCU-C-CGGCGCGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 69711 0.66 0.366974
Target:  5'- -cCGCCGCCGGGGgCaGCagcgcgucgaugugGCCC-CCCg -3'
miRNA:   3'- caGCGGCGGCUCCgG-CG--------------CGGGcGGGa -5'
29426 5' -68.5 NC_006151.1 + 84482 0.66 0.366974
Target:  5'- uUCGCCuUCGAGGCCGCugcgaucccgggcaGCgCGCgCCa -3'
miRNA:   3'- cAGCGGcGGCUCCGGCG--------------CGgGCG-GGa -5'
29426 5' -68.5 NC_006151.1 + 57227 0.66 0.361773
Target:  5'- --gGCCGUCGcAGGCgGCGCgCGCggCCUc -3'
miRNA:   3'- cagCGGCGGC-UCCGgCGCGgGCG--GGA- -5'
29426 5' -68.5 NC_006151.1 + 58807 0.66 0.361773
Target:  5'- --aGCgCGCCGcGuaCGCGCCgGCCCc -3'
miRNA:   3'- cagCG-GCGGCuCcgGCGCGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 108010 0.66 0.361773
Target:  5'- -cCGCCGCCGccaccaCCGCGCCCaagGCCa- -3'
miRNA:   3'- caGCGGCGGCucc---GGCGCGGG---CGGga -5'
29426 5' -68.5 NC_006151.1 + 20288 0.66 0.361773
Target:  5'- aUCuUC-CCGGGGCCccggGCGCCCGCCg- -3'
miRNA:   3'- cAGcGGcGGCUCCGG----CGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 95197 0.66 0.361773
Target:  5'- -cUGCagGCCGAugcccagcgagcGGCUGCGCCgcaCGCCCUc -3'
miRNA:   3'- caGCGg-CGGCU------------CCGGCGCGG---GCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 35414 0.66 0.361035
Target:  5'- -cCGCCGCgGGGGCCGgGCaugcaaaUgGUCCUc -3'
miRNA:   3'- caGCGGCGgCUCCGGCgCG-------GgCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 96835 0.66 0.354433
Target:  5'- -cCGCCaaugggggaaagGgCGGGGaaaCCGCGCCCGCCg- -3'
miRNA:   3'- caGCGG------------CgGCUCC---GGCGCGGGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.