miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 3' -59.3 NC_006151.1 + 118933 0.69 0.515344
Target:  5'- cGUCAUGaGCGCcgacGCGGCGCuGUCGCuGGAg -3'
miRNA:   3'- -UAGUAC-CGCG----CGUCGUGcCAGCG-CUU- -5'
29427 3' -59.3 NC_006151.1 + 118789 0.78 0.144593
Target:  5'- --gGUGGCGCGCGGCGCGG-CGCa-- -3'
miRNA:   3'- uagUACCGCGCGUCGUGCCaGCGcuu -5'
29427 3' -59.3 NC_006151.1 + 118128 0.78 0.166038
Target:  5'- cUCGUGGCGCGCAGCgccgacgacgccgcgGCGGUgGCGc- -3'
miRNA:   3'- uAGUACCGCGCGUCG---------------UGCCAgCGCuu -5'
29427 3' -59.3 NC_006151.1 + 117064 0.68 0.55506
Target:  5'- gGUCGUGGuCGaGCAGCAggcgcgUGGUCGCGu- -3'
miRNA:   3'- -UAGUACC-GCgCGUCGU------GCCAGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 115948 0.73 0.33182
Target:  5'- -gCcgGGCGCGCgAGCGCGagcGUCGUGAAg -3'
miRNA:   3'- uaGuaCCGCGCG-UCGUGC---CAGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 115574 0.67 0.636613
Target:  5'- ----gGGCGCGCgGGCA-GGUCGCGc- -3'
miRNA:   3'- uaguaCCGCGCG-UCGUgCCAGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 111543 0.75 0.238788
Target:  5'- cAUCAUGGCGCGCAGC--GGcCGCGu- -3'
miRNA:   3'- -UAGUACCGCGCGUCGugCCaGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 105873 0.66 0.697816
Target:  5'- ----aGGUGUGCuaccGCGCGGUCgGCGAc -3'
miRNA:   3'- uaguaCCGCGCGu---CGUGCCAG-CGCUu -5'
29427 3' -59.3 NC_006151.1 + 105782 0.67 0.616094
Target:  5'- cGUCAUcgcacGGUGCGCgaGGCGCGGagcgaCGCGGAc -3'
miRNA:   3'- -UAGUA-----CCGCGCG--UCGUGCCa----GCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 105285 0.68 0.575261
Target:  5'- ----gGGCGCGC-GCGCGGcCGCGc- -3'
miRNA:   3'- uaguaCCGCGCGuCGUGCCaGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 103960 0.68 0.595624
Target:  5'- cUCGcGGCGCGcCAGCGC-GUCgGCGAGc -3'
miRNA:   3'- uAGUaCCGCGC-GUCGUGcCAG-CGCUU- -5'
29427 3' -59.3 NC_006151.1 + 103636 0.66 0.727789
Target:  5'- --gGUGGCG-GCGGCgcugGCGGaCGCGGAc -3'
miRNA:   3'- uagUACCGCgCGUCG----UGCCaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 102694 0.67 0.626352
Target:  5'- ----gGGCGCcCGGCGCGGgcggCGCGGc -3'
miRNA:   3'- uaguaCCGCGcGUCGUGCCa---GCGCUu -5'
29427 3' -59.3 NC_006151.1 + 102545 0.69 0.525173
Target:  5'- gGUgGUGGCGCGC-GCGCGGgcccuguuugCGCGc- -3'
miRNA:   3'- -UAgUACCGCGCGuCGUGCCa---------GCGCuu -5'
29427 3' -59.3 NC_006151.1 + 102498 0.68 0.55506
Target:  5'- uUCAUGGaCGcCGCGGCGCGGgaccccgGCGGc -3'
miRNA:   3'- uAGUACC-GC-GCGUCGUGCCag-----CGCUu -5'
29427 3' -59.3 NC_006151.1 + 102401 0.75 0.24464
Target:  5'- gGUCGcGGCGCGCGucGCGCGGccCGCGAAc -3'
miRNA:   3'- -UAGUaCCGCGCGU--CGUGCCa-GCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 102266 0.66 0.727789
Target:  5'- cAUCcugGGCGCGCuGC-CGGagCGCGGc -3'
miRNA:   3'- -UAGua-CCGCGCGuCGuGCCa-GCGCUu -5'
29427 3' -59.3 NC_006151.1 + 101539 0.67 0.640717
Target:  5'- uUCGUGGCGCGCcuGCgcccgGCGGacguguacgcgcacgUCGCGGg -3'
miRNA:   3'- uAGUACCGCGCGu-CG-----UGCC---------------AGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 99555 0.66 0.717869
Target:  5'- -aCGUGG-GCGCGGCGCG--CGCGGc -3'
miRNA:   3'- uaGUACCgCGCGUCGUGCcaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 97844 0.7 0.467418
Target:  5'- -aCGUGcGCGCGCAGCGCGucGUcCGCGu- -3'
miRNA:   3'- uaGUAC-CGCGCGUCGUGC--CA-GCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.