miRNA display CGI


Results 1 - 20 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 5' -65.4 NC_006151.1 + 89056 0.66 0.547088
Target:  5'- cGUGCGCGguggccuugucGCCGUggacgcGCGuCCGGUuguuguucCGCGGg -3'
miRNA:   3'- cCGCGCGC-----------CGGCA------CGC-GGCCA--------GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 61472 0.66 0.547088
Target:  5'- gGGcCGCGCaacgccgaGGCCGUGaGCUGG-CGCu- -3'
miRNA:   3'- -CC-GCGCG--------CCGGCACgCGGCCaGCGcc -5'
29427 5' -65.4 NC_006151.1 + 114449 0.66 0.547088
Target:  5'- uGCuCGgGGCC-UGCGCCGGccaccgcaucgUCGCGc -3'
miRNA:   3'- cCGcGCgCCGGcACGCGGCC-----------AGCGCc -5'
29427 5' -65.4 NC_006151.1 + 140291 0.66 0.547088
Target:  5'- aGCuCGUGcGCCG-GCGCCGccUGCGGg -3'
miRNA:   3'- cCGcGCGC-CGGCaCGCGGCcaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 21520 0.66 0.547088
Target:  5'- gGGCGgGCucgggcuucGGCCG-GgGCCGGggcCGgGGc -3'
miRNA:   3'- -CCGCgCG---------CCGGCaCgCGGCCa--GCgCC- -5'
29427 5' -65.4 NC_006151.1 + 73117 0.66 0.547088
Target:  5'- cGGCG-GCGcGCCc-GCGCgGGUUGCa- -3'
miRNA:   3'- -CCGCgCGC-CGGcaCGCGgCCAGCGcc -5'
29427 5' -65.4 NC_006151.1 + 77216 0.66 0.547088
Target:  5'- -cCGCGCcGCCGcgugugUGCGCCGGgaggCGCc- -3'
miRNA:   3'- ccGCGCGcCGGC------ACGCGGCCa---GCGcc -5'
29427 5' -65.4 NC_006151.1 + 90745 0.66 0.547088
Target:  5'- cGGCGCccucgGgGGCgGcGgGCaCGGUgGCGGg -3'
miRNA:   3'- -CCGCG-----CgCCGgCaCgCG-GCCAgCGCC- -5'
29427 5' -65.4 NC_006151.1 + 97317 0.66 0.547088
Target:  5'- nGGCaGCGCGcGC--UGCGCgGGUCGUu- -3'
miRNA:   3'- -CCG-CGCGC-CGgcACGCGgCCAGCGcc -5'
29427 5' -65.4 NC_006151.1 + 99682 0.66 0.547088
Target:  5'- gGGCcUGCGcGCCGacgGCGCCGGggagaCGCc- -3'
miRNA:   3'- -CCGcGCGC-CGGCa--CGCGGCCa----GCGcc -5'
29427 5' -65.4 NC_006151.1 + 128275 0.66 0.547088
Target:  5'- uGCGCGCGcagcGCCGcGCGCaGGUa-CGGg -3'
miRNA:   3'- cCGCGCGC----CGGCaCGCGgCCAgcGCC- -5'
29427 5' -65.4 NC_006151.1 + 131889 0.66 0.547088
Target:  5'- nGGCaGCaCGGCCGaggGCGaCGGggGCGGc -3'
miRNA:   3'- -CCG-CGcGCCGGCa--CGCgGCCagCGCC- -5'
29427 5' -65.4 NC_006151.1 + 141697 0.66 0.547088
Target:  5'- -aCG-GCGGCUG-GCGgCGGaCGCGGu -3'
miRNA:   3'- ccGCgCGCCGGCaCGCgGCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 79093 0.66 0.547088
Target:  5'- cGCGCGCGaGCga-GCGCCccuccGUCGUGGc -3'
miRNA:   3'- cCGCGCGC-CGgcaCGCGGc----CAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 105792 0.66 0.547088
Target:  5'- cGGUGCGCgaGGCgCGgaGCGaCgCGGaCGCGGu -3'
miRNA:   3'- -CCGCGCG--CCG-GCa-CGC-G-GCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 102337 0.66 0.546163
Target:  5'- aGGCGCGCGcGCugcuggaCGUG-GCCGGcgacgaCGCGu -3'
miRNA:   3'- -CCGCGCGC-CG-------GCACgCGGCCa-----GCGCc -5'
29427 5' -65.4 NC_006151.1 + 37385 0.66 0.541545
Target:  5'- cGGC-CGaCGGCCGcguccgcuacggcgGCGCCGGggacuccCGCGa -3'
miRNA:   3'- -CCGcGC-GCCGGCa-------------CGCGGCCa------GCGCc -5'
29427 5' -65.4 NC_006151.1 + 4108 0.66 0.541545
Target:  5'- gGGCGacagagucCGCGGCC-UGCcgccgcucggccggGCCGGccccggggaucgcgUCGCGGa -3'
miRNA:   3'- -CCGC--------GCGCCGGcACG--------------CGGCC--------------AGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 33303 0.66 0.53786
Target:  5'- gGGCGCGC-GCgCGUGgGaCCGGgacCGGg -3'
miRNA:   3'- -CCGCGCGcCG-GCACgC-GGCCagcGCC- -5'
29427 5' -65.4 NC_006151.1 + 106793 0.66 0.53786
Target:  5'- uGGC-CGCGGCgGcgGUGCUcGUCGgGGc -3'
miRNA:   3'- -CCGcGCGCCGgCa-CGCGGcCAGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.