miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 122262 0.65 0.879362
Target:  5'- aGGGCGaggccacgcacaGGCGCCuGCucGGCUGCGUGu -3'
miRNA:   3'- aCCCGUag----------UCGCGG-UGu-UUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 120921 0.66 0.877921
Target:  5'- cUGGGCGUCAGCaaguaccacggcaugGCCGgCAacAACcGCGUc -3'
miRNA:   3'- -ACCCGUAGUCG---------------CGGU-GU--UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 22141 0.66 0.877921
Target:  5'- cGGGUcggagAUCAGCGCCACcaccccgcACggguccuccagcggGCGCGu -3'
miRNA:   3'- aCCCG-----UAGUCGCGGUGuu------UGa-------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 97276 0.66 0.875742
Target:  5'- cGGGCAgcgccUCGGCggcgggcguguugaGCCggcccgucgggcagcGCGcGCUGCGCGg -3'
miRNA:   3'- aCCCGU-----AGUCG--------------CGG---------------UGUuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 41749 0.66 0.875011
Target:  5'- gUGGGgAcCGGCGUCACGuccGGCggaaguUGCGCGc -3'
miRNA:   3'- -ACCCgUaGUCGCGGUGU---UUG------ACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 17304 0.66 0.875011
Target:  5'- cGGGCuucgagccGUCcgccggggGGCGCCGCGucAGCUcGUGCGu -3'
miRNA:   3'- aCCCG--------UAG--------UCGCGGUGU--UUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 49170 0.66 0.875011
Target:  5'- cUGGGC----GCGCCGCGGgguGCUGCuGCu -3'
miRNA:   3'- -ACCCGuaguCGCGGUGUU---UGACG-CGc -5'
29429 3' -56.4 NC_006151.1 + 71773 0.66 0.875011
Target:  5'- cUGcGGCAgCGGCGgCGgGGGCUGcCGCa -3'
miRNA:   3'- -AC-CCGUaGUCGCgGUgUUUGAC-GCGc -5'
29429 3' -56.4 NC_006151.1 + 92193 0.66 0.875011
Target:  5'- gGGGCcgCcgacGCGCCGCcgcGGCcGCGCu -3'
miRNA:   3'- aCCCGuaGu---CGCGGUGu--UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 96047 0.66 0.875011
Target:  5'- gGGGguUCAGCagguagcaGCUggcgaGCGAGCcGCGCGc -3'
miRNA:   3'- aCCCguAGUCG--------CGG-----UGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 135804 0.66 0.875011
Target:  5'- cGGGCGagcGCGCCGaggcCGAGCUuuuaGCGCGc -3'
miRNA:   3'- aCCCGUaguCGCGGU----GUUUGA----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 60917 0.66 0.875011
Target:  5'- cGGGCcaGUC-GCGCCAUggugggcgaguaGAGCUGCcccaGCGu -3'
miRNA:   3'- aCCCG--UAGuCGCGGUG------------UUUGACG----CGC- -5'
29429 3' -56.4 NC_006151.1 + 131964 0.66 0.874278
Target:  5'- cGGGCggCAGUacgugugGUCGCGGuACUcGCGCGa -3'
miRNA:   3'- aCCCGuaGUCG-------CGGUGUU-UGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 16977 0.66 0.873543
Target:  5'- -cGGCGU-GGCGCCAgGAGCgguuguggacccGCGCGa -3'
miRNA:   3'- acCCGUAgUCGCGGUgUUUGa-----------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 68277 0.66 0.867583
Target:  5'- cGcGGCGccgGGCGCCACGgcGGCcagGCGCGc -3'
miRNA:   3'- aC-CCGUag-UCGCGGUGU--UUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 99114 0.66 0.867583
Target:  5'- aGGGCGUgcUGGCGCUGCuGGACcccgggGCGCa -3'
miRNA:   3'- aCCCGUA--GUCGCGGUG-UUUGa-----CGCGc -5'
29429 3' -56.4 NC_006151.1 + 121991 0.66 0.867583
Target:  5'- aUGGGCggCGcGUGCCGCuuccACgcGCGCGu -3'
miRNA:   3'- -ACCCGuaGU-CGCGGUGuu--UGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 4340 0.66 0.867583
Target:  5'- gGcGGCGaaGGCGgCGCGGACgcggGCGCa -3'
miRNA:   3'- aC-CCGUagUCGCgGUGUUUGa---CGCGc -5'
29429 3' -56.4 NC_006151.1 + 93449 0.66 0.867583
Target:  5'- cGGGgGUCGcCGCCGCGGg--GCGCu -3'
miRNA:   3'- aCCCgUAGUcGCGGUGUUugaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 4215 0.66 0.867583
Target:  5'- aGGGCGgcCGGgG-CGCGGGCggGCGCGg -3'
miRNA:   3'- aCCCGUa-GUCgCgGUGUUUGa-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.