miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 3' -64.1 NC_006151.1 + 123056 0.66 0.540532
Target:  5'- cCGCGGcgcugcGCGAcgccGAGCgccGGCGGcGCCUGu -3'
miRNA:   3'- -GCGCC------CGCUuc--CUCGa--CCGCC-CGGAC- -5'
29430 3' -64.1 NC_006151.1 + 4336 0.66 0.540532
Target:  5'- gCGCGgcGGCGAAGGcGGCgcggacgcgGGCgcagaGGGCCUc -3'
miRNA:   3'- -GCGC--CCGCUUCC-UCGa--------CCG-----CCCGGAc -5'
29430 3' -64.1 NC_006151.1 + 82883 0.66 0.540532
Target:  5'- gCGCGGGUgGGAGGGGCga--GGGUCa- -3'
miRNA:   3'- -GCGCCCG-CUUCCUCGaccgCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 58086 0.66 0.540532
Target:  5'- uCGCGGGCGAgcucgggccccAGGAagGCgaagacgGGCgGGGUCg- -3'
miRNA:   3'- -GCGCCCGCU-----------UCCU--CGa------CCG-CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 72594 0.66 0.540532
Target:  5'- uCG-GGGUGAGGGGGggGGCaGGGCg-- -3'
miRNA:   3'- -GCgCCCGCUUCCUCgaCCG-CCCGgac -5'
29430 3' -64.1 NC_006151.1 + 51132 0.66 0.540532
Target:  5'- gCGCaGGGCGucccGGAGCacGuCGGGCCg- -3'
miRNA:   3'- -GCG-CCCGCuu--CCUCGacC-GCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 118223 0.66 0.539583
Target:  5'- gGCGGGCGcccGGAccaccggGCUcggcGGCGGGCUc- -3'
miRNA:   3'- gCGCCCGCuu-CCU-------CGA----CCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 18048 0.66 0.539583
Target:  5'- uGgGGGCGcagcGGGGAGCggGGUcccuuggGGGCCa- -3'
miRNA:   3'- gCgCCCGC----UUCCUCGa-CCG-------CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 8297 0.66 0.537685
Target:  5'- gCGCGGGCGccgcgucccgccccGAgcccccGGGGC-GcGCGGGCCUc -3'
miRNA:   3'- -GCGCCCGC--------------UU------CCUCGaC-CGCCCGGAc -5'
29430 3' -64.1 NC_006151.1 + 6444 0.66 0.534844
Target:  5'- gGCGGcCGGAGGAGgagaagaagaagacuCuucucUGGCGGGCCg- -3'
miRNA:   3'- gCGCCcGCUUCCUC---------------G-----ACCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 22833 0.66 0.534844
Target:  5'- gCGCGaGGCGAgcgcgcugcccaggaAgcccaGGAGCagGGCGGGgCUGc -3'
miRNA:   3'- -GCGC-CCGCU---------------U-----CCUCGa-CCGCCCgGAC- -5'
29430 3' -64.1 NC_006151.1 + 8038 0.66 0.531064
Target:  5'- uCGuCGGGagaGAGGGAGUUGGgGGGag-Gg -3'
miRNA:   3'- -GC-GCCCg--CUUCCUCGACCgCCCggaC- -5'
29430 3' -64.1 NC_006151.1 + 131027 0.66 0.531064
Target:  5'- aGCGGGUGAAGGccucccGCUcGUcgGGGCCg- -3'
miRNA:   3'- gCGCCCGCUUCCu-----CGAcCG--CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 96813 0.66 0.531064
Target:  5'- gCGCGGGCuuuu-AGC-GGCGGGCCc- -3'
miRNA:   3'- -GCGCCCGcuuccUCGaCCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 121449 0.66 0.531064
Target:  5'- uCGCuGGUGcccgcGGAGCUGGgGGGCa-- -3'
miRNA:   3'- -GCGcCCGCuu---CCUCGACCgCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 11331 0.66 0.531064
Target:  5'- gCGCGGGCGAuaccGC--GCGGGCCg- -3'
miRNA:   3'- -GCGCCCGCUuccuCGacCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 33980 0.66 0.528235
Target:  5'- gCGCGGGgacacucuuuccccCGGAGGGGCgucccGGCGcGCCg- -3'
miRNA:   3'- -GCGCCC--------------GCUUCCUCGa----CCGCcCGGac -5'
29430 3' -64.1 NC_006151.1 + 96586 0.66 0.521657
Target:  5'- uCGCGGcGCGAGGcgccGGGCgcgGGCGcGCCg- -3'
miRNA:   3'- -GCGCC-CGCUUC----CUCGa--CCGCcCGGac -5'
29430 3' -64.1 NC_006151.1 + 23880 0.66 0.521657
Target:  5'- gCGgGGGCGAgcGGGuucacgGGCUGggcgucggucGCGGGCCc- -3'
miRNA:   3'- -GCgCCCGCU--UCC------UCGAC----------CGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 3818 0.66 0.521657
Target:  5'- aGCuGGacuuGGuGCUGGCGGGgCUGg -3'
miRNA:   3'- gCGcCCgcuuCCuCGACCGCCCgGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.