miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 5' -58.2 NC_006151.1 + 13472 0.66 0.828192
Target:  5'- cCGCGgGCCggaCCGCCCCgcCGAcucggguccuggcacGCUGCCAg -3'
miRNA:   3'- -GUGUaUGGg--GGCGGGG--GCU---------------UGAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 56175 0.66 0.824848
Target:  5'- cCGCGUGCUCUCGCuggccgugCCgCCGGuggcGCUGCCGc -3'
miRNA:   3'- -GUGUAUGGGGGCG--------GG-GGCU----UGAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 37941 0.66 0.824848
Target:  5'- gCGCAgcccgGCCgCgUGCCCCgCGAGCUGgCGg -3'
miRNA:   3'- -GUGUa----UGG-GgGCGGGG-GCUUGAUgGU- -5'
29430 5' -58.2 NC_006151.1 + 107849 0.66 0.816371
Target:  5'- gGCGacgGCCCCgGCgCCCGAGacgGCCc -3'
miRNA:   3'- gUGUa--UGGGGgCGgGGGCUUga-UGGu -5'
29430 5' -58.2 NC_006151.1 + 142944 0.66 0.816371
Target:  5'- aCACGcGCgCCCGCCCUCGcccAUcGCCAu -3'
miRNA:   3'- -GUGUaUGgGGGCGGGGGCu--UGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 39861 0.66 0.816371
Target:  5'- uCGCcgAgCUCCGCggCCCCGAGggcCUGCCGg -3'
miRNA:   3'- -GUGuaUgGGGGCG--GGGGCUU---GAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 109477 0.66 0.811206
Target:  5'- gCACGgggaGCCCCCGCggcucauguucacacCUCCGccGCUGCCGc -3'
miRNA:   3'- -GUGUa---UGGGGGCG---------------GGGGCu-UGAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 117 0.66 0.80773
Target:  5'- aGCAUGgCCCCuCCCCCucAUUugCAu -3'
miRNA:   3'- gUGUAUgGGGGcGGGGGcuUGAugGU- -5'
29430 5' -58.2 NC_006151.1 + 83774 0.66 0.80773
Target:  5'- gCACGUACagcgCCCCGCCgagcgccaucaCCCGGGCaguggugcucuUGCCGg -3'
miRNA:   3'- -GUGUAUG----GGGGCGG-----------GGGCUUG-----------AUGGU- -5'
29430 5' -58.2 NC_006151.1 + 37871 0.66 0.80773
Target:  5'- cCGCGgACCCCCGCgCCgGGGaggcgACCGu -3'
miRNA:   3'- -GUGUaUGGGGGCGgGGgCUUga---UGGU- -5'
29430 5' -58.2 NC_006151.1 + 48609 0.66 0.80773
Target:  5'- uGCcUGCCgCCGCCgCCGcuuCUGCCu -3'
miRNA:   3'- gUGuAUGGgGGCGGgGGCuu-GAUGGu -5'
29430 5' -58.2 NC_006151.1 + 109119 0.66 0.798934
Target:  5'- cCGCcgGCCCgCGCCCgccggCCGGGC-ACCu -3'
miRNA:   3'- -GUGuaUGGGgGCGGG-----GGCUUGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 15010 0.66 0.78999
Target:  5'- gUACGgGCCCCCGCccgaCCCCGAggagguGCgcguCCAc -3'
miRNA:   3'- -GUGUaUGGGGGCG----GGGGCU------UGau--GGU- -5'
29430 5' -58.2 NC_006151.1 + 18522 0.66 0.78999
Target:  5'- aGCAUGCgcguCCCCGCCcgcgucggcaCCCGGAacgGCCGc -3'
miRNA:   3'- gUGUAUG----GGGGCGG----------GGGCUUga-UGGU- -5'
29430 5' -58.2 NC_006151.1 + 25450 0.66 0.78999
Target:  5'- cCGCG-GCCgCCCGCCCCCcccuGGC-GCCAu -3'
miRNA:   3'- -GUGUaUGG-GGGCGGGGGc---UUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 47955 0.66 0.78999
Target:  5'- --aGUugCCCCGCCCCCcGGC-ACg- -3'
miRNA:   3'- gugUAugGGGGCGGGGGcUUGaUGgu -5'
29430 5' -58.2 NC_006151.1 + 117012 0.66 0.78999
Target:  5'- aCGCGcuCCCCCGCgggCCCGGGCcgcaggcggUACCAg -3'
miRNA:   3'- -GUGUauGGGGGCGg--GGGCUUG---------AUGGU- -5'
29430 5' -58.2 NC_006151.1 + 124012 0.66 0.78999
Target:  5'- gGCGUucuCCCCCgGCCCCuCGGAg-GCCc -3'
miRNA:   3'- gUGUAu--GGGGG-CGGGG-GCUUgaUGGu -5'
29430 5' -58.2 NC_006151.1 + 140073 0.67 0.780908
Target:  5'- gCGCGUGCUCCgcgagauggUGCUCCUGAACgaggGCCu -3'
miRNA:   3'- -GUGUAUGGGG---------GCGGGGGCUUGa---UGGu -5'
29430 5' -58.2 NC_006151.1 + 112679 0.67 0.780908
Target:  5'- uCGC-UGgCCCCGCCCUggcuggCGGACUACgCGg -3'
miRNA:   3'- -GUGuAUgGGGGCGGGG------GCUUGAUG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.