miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29437 5' -56.9 NC_006151.1 + 24506 0.66 0.872811
Target:  5'- -----gCCCGUaaaAGUUgGgCGCCGCCa -3'
miRNA:   3'- gauauaGGGCG---UCAAgCgGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 39015 0.66 0.872811
Target:  5'- -----cCCCGCuc--CGCCGCCGCg- -3'
miRNA:   3'- gauauaGGGCGucaaGCGGCGGCGga -5'
29437 5' -56.9 NC_006151.1 + 13749 0.66 0.865403
Target:  5'- ---cGUCCCGCGGgcCGgaCCGCCcCCUu -3'
miRNA:   3'- gauaUAGGGCGUCaaGC--GGCGGcGGA- -5'
29437 5' -56.9 NC_006151.1 + 107574 0.66 0.865403
Target:  5'- -----gCCCGCGGagcugacUC-CCGCCGCCa -3'
miRNA:   3'- gauauaGGGCGUCa------AGcGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 61446 0.66 0.865403
Target:  5'- -----gCCCGCccg-CGuCCGCCGCCa -3'
miRNA:   3'- gauauaGGGCGucaaGC-GGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 73373 0.66 0.865403
Target:  5'- -cAUGUCCgucacgggggcgCGCAGcgCgGCCGCCGCg- -3'
miRNA:   3'- gaUAUAGG------------GCGUCaaG-CGGCGGCGga -5'
29437 5' -56.9 NC_006151.1 + 72635 0.66 0.857785
Target:  5'- ---gGUCCCGCGG-UC-CCGCgGCUc -3'
miRNA:   3'- gauaUAGGGCGUCaAGcGGCGgCGGa -5'
29437 5' -56.9 NC_006151.1 + 18445 0.66 0.857785
Target:  5'- -cGUcgCCCGCcuccucGUcgUCGUCGUCGCCg -3'
miRNA:   3'- gaUAuaGGGCGu-----CA--AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 44024 0.66 0.857785
Target:  5'- -----cCCCGCGGggaGCCGgCCGUCg -3'
miRNA:   3'- gauauaGGGCGUCaagCGGC-GGCGGa -5'
29437 5' -56.9 NC_006151.1 + 23746 0.66 0.857785
Target:  5'- -----cCuuGCAGUg-GCCGCCGUCa -3'
miRNA:   3'- gauauaGggCGUCAagCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 74346 0.66 0.85546
Target:  5'- ---cGUUCCGCAcGggCcgguugugcaccagGCCGCCGCCg -3'
miRNA:   3'- gauaUAGGGCGU-CaaG--------------CGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 72228 0.66 0.850754
Target:  5'- -cGUGUUCUGCAGcaccagcgacugccCGCgGCCGCCg -3'
miRNA:   3'- gaUAUAGGGCGUCaa------------GCGgCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 61513 0.66 0.849963
Target:  5'- -gAUAgaggUCUGCgGGUUCGCCcugGCCGCCc -3'
miRNA:   3'- gaUAUa---GGGCG-UCAAGCGG---CGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 39947 0.66 0.848375
Target:  5'- -----cCCCGCuGGUgcugaccccgggCGCCGUCGCCg -3'
miRNA:   3'- gauauaGGGCG-UCAa-----------GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 109488 0.66 0.847578
Target:  5'- -----cCCCGCGGcUcauguucacaccucCGCCGCUGCCg -3'
miRNA:   3'- gauauaGGGCGUCaA--------------GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 48583 0.66 0.842754
Target:  5'- cCUGccgCCCGgGGUgcgccucgucgugccUGCCGCCGCCg -3'
miRNA:   3'- -GAUauaGGGCgUCAa--------------GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 130545 0.66 0.841943
Target:  5'- -----cCCCGCgcgagggcGGcgCGCUGCCGCCc -3'
miRNA:   3'- gauauaGGGCG--------UCaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 139921 0.66 0.841943
Target:  5'- ------gCCGCGGgcucgUCGCCguggGCCGCCg -3'
miRNA:   3'- gauauagGGCGUCa----AGCGG----CGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 72031 0.66 0.841943
Target:  5'- -----cCCCGCGcGggCGCC-CCGCCg -3'
miRNA:   3'- gauauaGGGCGU-CaaGCGGcGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 62704 0.66 0.841943
Target:  5'- --uUGUCCC-CGGUccCGCCccGCCGCCc -3'
miRNA:   3'- gauAUAGGGcGUCAa-GCGG--CGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.