miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29441 3' -55.6 NC_006151.1 + 68748 0.66 0.924959
Target:  5'- cUCUCGaagguCACGUAGCCGgcGGUGGCGCGc- -3'
miRNA:   3'- -AGAGU-----GUGUGUUGGC--CCAUCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 38291 0.66 0.924959
Target:  5'- gCUCGCcgaggccgccGCGCGGcCCGGGcc-CGCGGAg -3'
miRNA:   3'- aGAGUG----------UGUGUU-GGCCCaucGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 135794 0.66 0.924959
Target:  5'- uUCUCACu----GCCGGGcgAGCGCGc- -3'
miRNA:   3'- -AGAGUGuguguUGGCCCa-UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 127361 0.66 0.924959
Target:  5'- gUCUCGCcCugGGCgGGGac-CGCGGGg -3'
miRNA:   3'- -AGAGUGuGugUUGgCCCaucGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 103679 0.66 0.924959
Target:  5'- --gCGCGCGCGGCgGGGgugcuGCGCGc- -3'
miRNA:   3'- agaGUGUGUGUUGgCCCau---CGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 103480 0.66 0.924959
Target:  5'- gCUCGCgGCGCuguggcGCCuGGUGGCGCGc- -3'
miRNA:   3'- aGAGUG-UGUGu-----UGGcCCAUCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 28266 0.66 0.924959
Target:  5'- cCUCACACGugggccCCGGGga-CGCGGGc -3'
miRNA:   3'- aGAGUGUGUguu---GGCCCaucGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 113092 0.66 0.924959
Target:  5'- -gUCGCcgcCGCcACCGGGggcggGGCcGCGGAc -3'
miRNA:   3'- agAGUGu--GUGuUGGCCCa----UCG-CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 32564 0.66 0.91941
Target:  5'- gUCUCccggGCACccGCGGCCGGGcGGagggggaaGCGGGa -3'
miRNA:   3'- -AGAG----UGUG--UGUUGGCCCaUCg-------CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 3421 0.66 0.91941
Target:  5'- gUCUCGC---CGGCCGGGacGCgGCGGAa -3'
miRNA:   3'- -AGAGUGuguGUUGGCCCauCG-CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 17390 0.66 0.913621
Target:  5'- -gUC-CGCACGACgGGGcgcgUGGCGCGcGGc -3'
miRNA:   3'- agAGuGUGUGUUGgCCC----AUCGCGC-CU- -5'
29441 3' -55.6 NC_006151.1 + 21526 0.66 0.913621
Target:  5'- gCUCGgGCuuCGGCCGGGgccggGGC-CGGGg -3'
miRNA:   3'- aGAGUgUGu-GUUGGCCCa----UCGcGCCU- -5'
29441 3' -55.6 NC_006151.1 + 78317 0.66 0.913621
Target:  5'- gCUCGacagGCugGAcgagcgccCCGGGgcgGGCGCGGGc -3'
miRNA:   3'- aGAGUg---UGugUU--------GGCCCa--UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 82932 0.66 0.913621
Target:  5'- --gCACACGCAcuGCCGGauGUGGUcgccguacGCGGAc -3'
miRNA:   3'- agaGUGUGUGU--UGGCC--CAUCG--------CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 130292 0.66 0.913621
Target:  5'- ---gGCGCGC-GCCGGccgacGGCGCGGAg -3'
miRNA:   3'- agagUGUGUGuUGGCCca---UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 88265 0.66 0.913621
Target:  5'- cCUCGacgaaGCGCAccgagaccgccGCCGGGUGGUagacGUGGGg -3'
miRNA:   3'- aGAGUg----UGUGU-----------UGGCCCAUCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 16963 0.66 0.913621
Target:  5'- cCUCGuC-CACucGCCGGcGUGGCGCcaGGAg -3'
miRNA:   3'- aGAGU-GuGUGu-UGGCC-CAUCGCG--CCU- -5'
29441 3' -55.6 NC_006151.1 + 122635 0.66 0.912434
Target:  5'- gUUCACGCACAACCuGGacgaccuggagcGGCGCGa- -3'
miRNA:   3'- aGAGUGUGUGUUGGcCCa-----------UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 91670 0.66 0.907592
Target:  5'- -aUCACcUGC-GCCGGGUGGUGCGc- -3'
miRNA:   3'- agAGUGuGUGuUGGCCCAUCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 139819 0.66 0.907592
Target:  5'- gUCUCcgcgACGCAC-GCgCGGGUcGGCGCGa- -3'
miRNA:   3'- -AGAG----UGUGUGuUG-GCCCA-UCGCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.