miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 3' -57.6 NC_006151.1 + 112980 0.66 0.843566
Target:  5'- cGCGCG-CgCGCCgCCG-AGCCUGGGGGg -3'
miRNA:   3'- -UGUGUaG-GCGG-GGCuUCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 135210 0.66 0.843566
Target:  5'- -aGCGUCCGCUCCaGGacGGCCaCGucGGACa -3'
miRNA:   3'- ugUGUAGGCGGGG-CU--UCGG-GCu-CUUG- -5'
29443 3' -57.6 NC_006151.1 + 90708 0.66 0.843566
Target:  5'- gACGCGcCCGCCCCGcAGGCggCGGcGACg -3'
miRNA:   3'- -UGUGUaGGCGGGGC-UUCGg-GCUcUUG- -5'
29443 3' -57.6 NC_006151.1 + 44976 0.66 0.843566
Target:  5'- cCACcgUUGCCCCGc-GCCCGuccucGAACu -3'
miRNA:   3'- uGUGuaGGCGGGGCuuCGGGCu----CUUG- -5'
29443 3' -57.6 NC_006151.1 + 122455 0.66 0.842761
Target:  5'- -gGCGUCCacggcggcggcggGCgCCGAGGCC-GGGGACg -3'
miRNA:   3'- ugUGUAGG-------------CGgGGCUUCGGgCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 37239 0.66 0.838709
Target:  5'- -gGCccCgGCCCCGGAGCCCGcccggcccccgcgcaGGAAg -3'
miRNA:   3'- ugUGuaGgCGGGGCUUCGGGC---------------UCUUg -5'
29443 3' -57.6 NC_006151.1 + 50714 0.66 0.838709
Target:  5'- gGCgACggCCGCCCCGGcgguccagcugccccGGCCCcggcaacGGAGCa -3'
miRNA:   3'- -UG-UGuaGGCGGGGCU---------------UCGGGc------UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 69958 0.66 0.835433
Target:  5'- -aACAgCC-CCCCGggGCCgCGcGGGCg -3'
miRNA:   3'- ugUGUaGGcGGGGCuuCGG-GCuCUUG- -5'
29443 3' -57.6 NC_006151.1 + 98051 0.66 0.835433
Target:  5'- aGCACcaCCaGCCCCGGgcgcucGGCCUGGGGcucGCa -3'
miRNA:   3'- -UGUGuaGG-CGGGGCU------UCGGGCUCU---UG- -5'
29443 3' -57.6 NC_006151.1 + 14087 0.66 0.835433
Target:  5'- gGCACucgCCGCCCCaacGAcGCCgaCGGGGAUc -3'
miRNA:   3'- -UGUGua-GGCGGGG---CUuCGG--GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 53269 0.66 0.835433
Target:  5'- gGCACAgcugCCGCgcgugCUCGAAGCgCGAcucGAGCg -3'
miRNA:   3'- -UGUGUa---GGCG-----GGGCUUCGgGCU---CUUG- -5'
29443 3' -57.6 NC_006151.1 + 141960 0.66 0.835433
Target:  5'- cCACGUCCgGCUcugcgggauCCGGucgggcGGCCCGGGAAa -3'
miRNA:   3'- uGUGUAGG-CGG---------GGCU------UCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 115484 0.66 0.835433
Target:  5'- cACACGUCguCGUaCgCGAuGCCCGAGAAg -3'
miRNA:   3'- -UGUGUAG--GCG-GgGCUuCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 130635 0.66 0.827118
Target:  5'- uCACGagCGCCgCCGAGGCCgccugcggCGuGAACg -3'
miRNA:   3'- uGUGUagGCGG-GGCUUCGG--------GCuCUUG- -5'
29443 3' -57.6 NC_006151.1 + 139061 0.66 0.827118
Target:  5'- cGCuCAUCCuCCUCGAGcucgggcuccGCCUGGGGGCg -3'
miRNA:   3'- -UGuGUAGGcGGGGCUU----------CGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 76870 0.66 0.827118
Target:  5'- cGCGCcgCCGCCa-GGAGCCCcAGcGCc -3'
miRNA:   3'- -UGUGuaGGCGGggCUUCGGGcUCuUG- -5'
29443 3' -57.6 NC_006151.1 + 113083 0.66 0.827118
Target:  5'- cGCGCggCCGUCgCCGccGCCacCGGGGGCg -3'
miRNA:   3'- -UGUGuaGGCGG-GGCuuCGG--GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 133816 0.66 0.827118
Target:  5'- uGCACGUCCGgguggcguaaCCCaGGGCCaCGAcGAGCa -3'
miRNA:   3'- -UGUGUAGGCg---------GGGcUUCGG-GCU-CUUG- -5'
29443 3' -57.6 NC_006151.1 + 63233 0.66 0.827118
Target:  5'- aACGCGUCCGCgUCGAAGgucagcacCUCGccGGAGCu -3'
miRNA:   3'- -UGUGUAGGCGgGGCUUC--------GGGC--UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 129908 0.66 0.818626
Target:  5'- aGCACGg-CGUaCUCGgcGUCCGAGAGCg -3'
miRNA:   3'- -UGUGUagGCG-GGGCuuCGGGCUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.