miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 5' -65.7 NC_006151.1 + 130007 0.66 0.521575
Target:  5'- aUGUCCgagaCgGCGCGCGCcacggccgucguGAGCcAGCGCa -3'
miRNA:   3'- gGCGGG----GgCGCGCGCG------------CUCGcUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 88108 0.66 0.521575
Target:  5'- -gGCCCgUCGaggucCGacaGCGGGCGGGCGCu -3'
miRNA:   3'- ggCGGG-GGCgc---GCg--CGCUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 22155 0.66 0.521575
Target:  5'- gCGCcaccaCCCCGCaCGgGUccuccAGCGGGCGCg -3'
miRNA:   3'- gGCG-----GGGGCGcGCgCGc----UCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 23139 0.66 0.521575
Target:  5'- uCCGUCgCCGgGCccucgGCGgGAGCG-GCGg -3'
miRNA:   3'- -GGCGGgGGCgCG-----CGCgCUCGCuCGCg -5'
29443 5' -65.7 NC_006151.1 + 38301 0.66 0.521575
Target:  5'- gCCGCCgcgcggCCCGgGCcCGCGgAGCccGCGCc -3'
miRNA:   3'- -GGCGG------GGGCgCGcGCGC-UCGcuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 58364 0.66 0.521575
Target:  5'- -gGUCCgCCGCGuCGUGaucucgacggaGAGCGcGGCGCa -3'
miRNA:   3'- ggCGGG-GGCGC-GCGCg----------CUCGC-UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 66775 0.66 0.521575
Target:  5'- gCCGCCCUCGgGaCG-GCG-GCG-GCGg -3'
miRNA:   3'- -GGCGGGGGCgC-GCgCGCuCGCuCGCg -5'
29443 5' -65.7 NC_006151.1 + 95306 0.66 0.521575
Target:  5'- gCGgCCCgGCGCaGCGCGgcaaAGuCGAagGCGCc -3'
miRNA:   3'- gGCgGGGgCGCG-CGCGC----UC-GCU--CGCG- -5'
29443 5' -65.7 NC_006151.1 + 97268 0.66 0.521575
Target:  5'- -gGCCCacaCGgGCaGCGCcucggcGGCGGGCGUg -3'
miRNA:   3'- ggCGGGg--GCgCG-CGCGc-----UCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 104013 0.66 0.521575
Target:  5'- -gGCgCgCCGCGCG-GCGgaGGUGgAGCGCg -3'
miRNA:   3'- ggCGgG-GGCGCGCgCGC--UCGC-UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 61749 0.66 0.521575
Target:  5'- aCGCCCUguaCGCGguCGCGgGGGCcguGGUGCu -3'
miRNA:   3'- gGCGGGG---GCGC--GCGCgCUCGc--UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 125858 0.66 0.521575
Target:  5'- cCUGCCCCUcgagGUGUacacGCGCGAG-GAGCu- -3'
miRNA:   3'- -GGCGGGGG----CGCG----CGCGCUCgCUCGcg -5'
29443 5' -65.7 NC_006151.1 + 64874 0.66 0.515205
Target:  5'- gCUGCCCggcgggagcagggCCGCgaagagcacgcagcgGCGCGCGAGCaccuccacGGCGUa -3'
miRNA:   3'- -GGCGGG-------------GGCG---------------CGCGCGCUCGc-------UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 42320 0.66 0.512485
Target:  5'- uCC-UCCCCGCGCGaagcuGCGAcGgGAGUGg -3'
miRNA:   3'- -GGcGGGGGCGCGCg----CGCU-CgCUCGCg -5'
29443 5' -65.7 NC_006151.1 + 83570 0.66 0.512485
Target:  5'- -gGCCCUCGacCGCGgGCccgaaGAGCGggaccaGGCGCg -3'
miRNA:   3'- ggCGGGGGC--GCGCgCG-----CUCGC------UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 91482 0.66 0.512485
Target:  5'- cCUGCUCgCCGCGCaCGCuGGCGuGCa- -3'
miRNA:   3'- -GGCGGG-GGCGCGcGCGcUCGCuCGcg -5'
29443 5' -65.7 NC_006151.1 + 97362 0.66 0.512485
Target:  5'- gCCGCggcggCgGCGgGCGCG-GCGGGgGCg -3'
miRNA:   3'- -GGCGgg---GgCGCgCGCGCuCGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 98259 0.66 0.512485
Target:  5'- gCGCUCgUGCGCGCGCucGAG-GAG-GCc -3'
miRNA:   3'- gGCGGGgGCGCGCGCG--CUCgCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 139780 0.66 0.512485
Target:  5'- gCGCCCCC-CGauCGUcugucggaGAGCGcGCGCg -3'
miRNA:   3'- gGCGGGGGcGCgcGCG--------CUCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 83177 0.66 0.512485
Target:  5'- -gGUCgUCGCGCGgGCG-GCagagcucguuGAGCGCg -3'
miRNA:   3'- ggCGGgGGCGCGCgCGCuCG----------CUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.