miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 72048 0.66 0.523094
Target:  5'- gCCGcGCA-GCGuCUCGGCGGcgcgcgccaccacccGCgCCGUCa -3'
miRNA:   3'- aGGC-CGUcCGC-GAGCCGCU---------------CG-GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 72845 0.66 0.523094
Target:  5'- aCUGGUAcucccguugcucgucGGCGaggCGGCGGcGCCCGUg -3'
miRNA:   3'- aGGCCGU---------------CCGCga-GCCGCU-CGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 129710 0.66 0.518438
Target:  5'- gCCGaGCAGGCaguugagcagcagGUUC-GCGGGCCCG-Cg -3'
miRNA:   3'- aGGC-CGUCCG-------------CGAGcCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 40581 0.66 0.510099
Target:  5'- -gCGGCGGaGgGCUCGGCG-GCggaggaUCGUCc -3'
miRNA:   3'- agGCCGUC-CgCGAGCCGCuCG------GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 17321 0.66 0.510099
Target:  5'- gCCGGgGGGCGC-CGcGUcAGCUCGUg -3'
miRNA:   3'- aGGCCgUCCGCGaGC-CGcUCGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 91742 0.66 0.510099
Target:  5'- aUCgCGGCGGGCGa---GCGGGCUCGg- -3'
miRNA:   3'- -AG-GCCGUCCGCgagcCGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 100222 0.66 0.510099
Target:  5'- gCC-GCGGGCGCcgUGGcCGAGCgCGUg -3'
miRNA:   3'- aGGcCGUCCGCGa-GCC-GCUCGgGCAg -5'
29446 5' -64.7 NC_006151.1 + 101236 0.66 0.510099
Target:  5'- cCCGGCGGGgGCaugugcgccaUCaGCGAGCUcccgaacaagauCGUCu -3'
miRNA:   3'- aGGCCGUCCgCG----------AGcCGCUCGG------------GCAG- -5'
29446 5' -64.7 NC_006151.1 + 132039 0.66 0.510099
Target:  5'- gCCGGC-GGCGCgCGGC-AGCgCGg- -3'
miRNA:   3'- aGGCCGuCCGCGaGCCGcUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 141626 0.66 0.510099
Target:  5'- aUCgGGCGGGuCGCUgccgcggcggcgCGGCGGGgcCCCG-Cg -3'
miRNA:   3'- -AGgCCGUCC-GCGA------------GCCGCUC--GGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 67855 0.66 0.510099
Target:  5'- cCCGGCGagccGGCGCcgaggUGGCGcgcgcgccAGCCCG-Cg -3'
miRNA:   3'- aGGCCGU----CCGCGa----GCCGC--------UCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 121093 0.66 0.509176
Target:  5'- -gCGGCgccGGGCugcacgaccacucGCUCGGgGAGCaCGUCa -3'
miRNA:   3'- agGCCG---UCCG-------------CGAGCCgCUCGgGCAG- -5'
29446 5' -64.7 NC_006151.1 + 117222 0.66 0.509176
Target:  5'- -gCGGCGucgacgacGcGCGCguccacgUCGGCGGGCCCGa- -3'
miRNA:   3'- agGCCGU--------C-CGCG-------AGCCGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 38384 0.66 0.5009
Target:  5'- gCCGGCGccGGCGg-CGGCGGGCgCCc-- -3'
miRNA:   3'- aGGCCGU--CCGCgaGCCGCUCG-GGcag -5'
29446 5' -64.7 NC_006151.1 + 38779 0.66 0.5009
Target:  5'- aCCGGCuccGGCGCcCGcuCGGGCCCa-- -3'
miRNA:   3'- aGGCCGu--CCGCGaGCc-GCUCGGGcag -5'
29446 5' -64.7 NC_006151.1 + 89716 0.66 0.5009
Target:  5'- cCCGGC-GGCGC-CGGCcgcGGCCgCGg- -3'
miRNA:   3'- aGGCCGuCCGCGaGCCGc--UCGG-GCag -5'
29446 5' -64.7 NC_006151.1 + 128787 0.66 0.5009
Target:  5'- -aCGGCcucGGuCGcCUCGGCGAGCgCGg- -3'
miRNA:   3'- agGCCGu--CC-GC-GAGCCGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 58742 0.66 0.499984
Target:  5'- gUCGcGCA-GCGCcgCGGCcaccgcggccgccGAGCCCGUCc -3'
miRNA:   3'- aGGC-CGUcCGCGa-GCCG-------------CUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 107541 0.66 0.491775
Target:  5'- cCCGGCGGcccCGC-CGGCGccgccGCCCGcCa -3'
miRNA:   3'- aGGCCGUCc--GCGaGCCGCu----CGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 73788 0.66 0.491775
Target:  5'- -gCGGCGGcGCGCaccUCGGCGc-CCaCGUCg -3'
miRNA:   3'- agGCCGUC-CGCG---AGCCGCucGG-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.