miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 3' -64.1 NC_006151.1 + 109484 0.65 0.537982
Target:  5'- gAGCCCCCgcGGCUCaUGuucacaccuccgccGCuGCCGCCg- -3'
miRNA:   3'- -UCGGGGG--CCGAGaAC--------------CGcUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 75262 0.66 0.531337
Target:  5'- -aCCUCCgcgGGCUCcUGGCGcagcGCCGCCa- -3'
miRNA:   3'- ucGGGGG---CCGAGaACCGC----UGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 4857 0.66 0.531337
Target:  5'- gAGUCCCCGGCgccgccguagCggacGCGGCCGUCg- -3'
miRNA:   3'- -UCGGGGGCCGa---------Gaac-CGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 3146 0.66 0.531337
Target:  5'- cGCCCUCGGCgggCUcGGCGcagaGCU-CCUCg -3'
miRNA:   3'- uCGGGGGCCGa--GAaCCGC----UGGcGGAG- -5'
29448 3' -64.1 NC_006151.1 + 64423 0.66 0.521897
Target:  5'- cGCUCUC-GCUCUgcgcgcGcGUGGCCGCCUCc -3'
miRNA:   3'- uCGGGGGcCGAGAa-----C-CGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 38341 0.66 0.521897
Target:  5'- uGCCCCC-GCUC-UGGCccgagcaGCCcgGCCUCg -3'
miRNA:   3'- uCGGGGGcCGAGaACCGc------UGG--CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 58004 0.66 0.521897
Target:  5'- cGCCUCCGGCgCggccGCGGCCaCCUUg -3'
miRNA:   3'- uCGGGGGCCGaGaac-CGCUGGcGGAG- -5'
29448 3' -64.1 NC_006151.1 + 102694 0.66 0.521897
Target:  5'- gGGCgCCCGGCgcg-GGCGGCgCgGCCg- -3'
miRNA:   3'- -UCGgGGGCCGagaaCCGCUG-G-CGGag -5'
29448 3' -64.1 NC_006151.1 + 103894 0.66 0.521897
Target:  5'- cGCCaCCUGGCgCUggaggUGGCGcgcgcgGCCGCCg- -3'
miRNA:   3'- uCGG-GGGCCGaGA-----ACCGC------UGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 141658 0.66 0.521897
Target:  5'- gGGCCCCgCgGGCUCguugUGGaggcauguCUGCCUCc -3'
miRNA:   3'- -UCGGGG-G-CCGAGa---ACCgcu-----GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 10489 0.66 0.521897
Target:  5'- gAGCCgCCCGGCgc---GCGcCCGCCg- -3'
miRNA:   3'- -UCGG-GGGCCGagaacCGCuGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 75631 0.66 0.521897
Target:  5'- gAGCCCaCgGGCUUgccgucgucGGgGGCCGgCUCg -3'
miRNA:   3'- -UCGGG-GgCCGAGaa-------CCgCUGGCgGAG- -5'
29448 3' -64.1 NC_006151.1 + 90631 0.66 0.521897
Target:  5'- cGGCCCgCgGGCgCUUGGCGAUgGgCg- -3'
miRNA:   3'- -UCGGG-GgCCGaGAACCGCUGgCgGag -5'
29448 3' -64.1 NC_006151.1 + 57452 0.66 0.512522
Target:  5'- cGGCCCCCGcgucggccagguGCcgCgccGCGGCgGCCUCg -3'
miRNA:   3'- -UCGGGGGC------------CGa-GaacCGCUGgCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 55062 0.66 0.512522
Target:  5'- cGGCgaggaCCCGGCgggCUcGGCcgcGGCgCGCCUCg -3'
miRNA:   3'- -UCGg----GGGCCGa--GAaCCG---CUG-GCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 133459 0.66 0.512522
Target:  5'- uGGCCCCggucgaGGCccgCgaGGCGGCCGCg-- -3'
miRNA:   3'- -UCGGGGg-----CCGa--GaaCCGCUGGCGgag -5'
29448 3' -64.1 NC_006151.1 + 62573 0.66 0.512522
Target:  5'- uGGCCCCCGGgUCg-GGCGACgacgaGUUUg -3'
miRNA:   3'- -UCGGGGGCCgAGaaCCGCUGg----CGGAg -5'
29448 3' -64.1 NC_006151.1 + 64113 0.66 0.503217
Target:  5'- aGGUCguggCCCGGCgg-UGGCGcgcCCGUCUCg -3'
miRNA:   3'- -UCGG----GGGCCGagaACCGCu--GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 126028 0.66 0.503217
Target:  5'- aGGgCCUCGGCgacgugGGCG-CCGCCgUCg -3'
miRNA:   3'- -UCgGGGGCCGagaa--CCGCuGGCGG-AG- -5'
29448 3' -64.1 NC_006151.1 + 5403 0.66 0.503217
Target:  5'- cGUCCCCGGCga--GGcCGAguCCGuCCUCg -3'
miRNA:   3'- uCGGGGGCCGagaaCC-GCU--GGC-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.