miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 122541 0.66 0.881244
Target:  5'- aCGUgUUCCGGcc-CGCCuCGCGGCgCCUg -3'
miRNA:   3'- -GCA-GAGGUCuuuGUGGuGCGCCG-GGA- -5'
29449 3' -56.9 NC_006151.1 + 118462 0.66 0.881244
Target:  5'- uGg--CCGcGGACGCgCACGCGGCCUa -3'
miRNA:   3'- gCagaGGUcUUUGUG-GUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 102401 0.66 0.881244
Target:  5'- gGUCg-CGGcgcGCGUCGCGCGGCCCg -3'
miRNA:   3'- gCAGagGUCuu-UGUGGUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 89705 0.66 0.881244
Target:  5'- gCGUCcaggaacCCGGcgGCGCCGgcCGCGGCCg- -3'
miRNA:   3'- -GCAGa------GGUCuuUGUGGU--GCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 88911 0.66 0.881244
Target:  5'- gCGUCgggcgagCGGAAGCGCC-CGCGGCg-- -3'
miRNA:   3'- -GCAGag-----GUCUUUGUGGuGCGCCGgga -5'
29449 3' -56.9 NC_006151.1 + 81981 0.66 0.881244
Target:  5'- aCGgC-CCGGGcuGCACCACgGCGGCCa- -3'
miRNA:   3'- -GCaGaGGUCUu-UGUGGUG-CGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 6543 0.66 0.880542
Target:  5'- aGUCUUCAGAGuccGCGCCGgaGCGGagacggucggaucCCCUc -3'
miRNA:   3'- gCAGAGGUCUU---UGUGGUg-CGCC-------------GGGA- -5'
29449 3' -56.9 NC_006151.1 + 8953 0.66 0.874127
Target:  5'- gGUC-CCGGuccCACgCGCGCGcGCCCc -3'
miRNA:   3'- gCAGaGGUCuuuGUG-GUGCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 17315 0.66 0.874127
Target:  5'- cCGUCcgCCgGGggGCGCCGCGuCaGCUCg -3'
miRNA:   3'- -GCAGa-GG-UCuuUGUGGUGC-GcCGGGa -5'
29449 3' -56.9 NC_006151.1 + 135478 0.66 0.874127
Target:  5'- gCGUgUCCgcgcGGGccaGGCGgCGCGCGGCCUc -3'
miRNA:   3'- -GCAgAGG----UCU---UUGUgGUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 136003 0.66 0.874127
Target:  5'- --cCUCCAcGAcgGCCucauCGCGGCCCUg -3'
miRNA:   3'- gcaGAGGUcUUugUGGu---GCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 57247 0.66 0.874127
Target:  5'- gCGg--CCuc-GGCGuCCGCGCGGCCCUc -3'
miRNA:   3'- -GCagaGGucuUUGU-GGUGCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 137103 0.66 0.866794
Target:  5'- gGUgCUggCCGGGGACGCCugGgGGCgCg -3'
miRNA:   3'- gCA-GA--GGUCUUUGUGGugCgCCGgGa -5'
29449 3' -56.9 NC_006151.1 + 34008 0.66 0.866794
Target:  5'- gCGUC-CCGGc-GCGCCgGCcCGGCCCUc -3'
miRNA:   3'- -GCAGaGGUCuuUGUGG-UGcGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 38558 0.66 0.866794
Target:  5'- gCGgcgCaagaAGAAGCGCCGCGCgcccggGGCCCg -3'
miRNA:   3'- -GCagaGg---UCUUUGUGGUGCG------CCGGGa -5'
29449 3' -56.9 NC_006151.1 + 61519 0.66 0.866794
Target:  5'- gGUCUgCGGGuuCGcCCugGCcGCCCUg -3'
miRNA:   3'- gCAGAgGUCUuuGU-GGugCGcCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 134746 0.66 0.866794
Target:  5'- uGUCgccCCgAGcAGCGCgCGCGgGGCCCg -3'
miRNA:   3'- gCAGa--GG-UCuUUGUG-GUGCgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 68025 0.66 0.866794
Target:  5'- ---gUCCAGGu---CCAgGCGGCCCg -3'
miRNA:   3'- gcagAGGUCUuuguGGUgCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 96459 0.66 0.866794
Target:  5'- ---gUCCAGGucCGCCuCGCGGCuCCg -3'
miRNA:   3'- gcagAGGUCUuuGUGGuGCGCCG-GGa -5'
29449 3' -56.9 NC_006151.1 + 64606 0.66 0.866794
Target:  5'- gGUacgCCAGcgGCGCCGCGCcgccGGCCg- -3'
miRNA:   3'- gCAga-GGUCuuUGUGGUGCG----CCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.