miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 82145 0.66 0.616007
Target:  5'- gGCGGGcCCGGCggcuccAGGUCCgagccgagcgCCGGGGGcGCg -3'
miRNA:   3'- -CGUCCcGGCUG------UCUAGG----------GGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 15867 0.66 0.616007
Target:  5'- aGgAGGGCgGGaAGGacgccgcCCgCCGGGGGACg -3'
miRNA:   3'- -CgUCCCGgCUgUCUa------GG-GGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 141062 0.66 0.616007
Target:  5'- uCAGGGaaacaCGACAGAcUCCCGGagcaccGGGAg -3'
miRNA:   3'- cGUCCCg----GCUGUCUaGGGGCC------CCCUg -5'
29449 5' -62.9 NC_006151.1 + 1746 0.66 0.616007
Target:  5'- cGCAGccaccuccGGCCGGgGGAUCCgCGcGGaGGAg -3'
miRNA:   3'- -CGUC--------CCGGCUgUCUAGGgGC-CC-CCUg -5'
29449 5' -62.9 NC_006151.1 + 2174 0.66 0.616007
Target:  5'- cCGGGGCCGGCcccggcgcccgAGGcCCCCGcGGGcCg -3'
miRNA:   3'- cGUCCCGGCUG-----------UCUaGGGGCcCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 5978 0.66 0.616007
Target:  5'- uGCucGGaGCCuGAUGGAgagCCcgaCCGGGGGACc -3'
miRNA:   3'- -CGu-CC-CGG-CUGUCUa--GG---GGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 40091 0.66 0.616007
Target:  5'- cCGGGGCCGG-----CCCCGGcGaGGACg -3'
miRNA:   3'- cGUCCCGGCUgucuaGGGGCC-C-CCUG- -5'
29449 5' -62.9 NC_006151.1 + 78701 0.66 0.616007
Target:  5'- cCGGGGCCucgucgccgcGACGGcgCCCgUGGGGcGCg -3'
miRNA:   3'- cGUCCCGG----------CUGUCuaGGG-GCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 22798 0.66 0.615029
Target:  5'- uGCuGGGCCGuC---UCCCCGgccgucaggugcaGGGGGCg -3'
miRNA:   3'- -CGuCCCGGCuGucuAGGGGC-------------CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 78309 0.66 0.606239
Target:  5'- -gAGGGCaugcuCGACAGGcuggacgagcgCCCCGGGgcGGGCg -3'
miRNA:   3'- cgUCCCG-----GCUGUCUa----------GGGGCCC--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 121430 0.66 0.606239
Target:  5'- cGCGGGGCuCGcgccggccucGCuGGUgCCCgcggagcuGGGGGGCa -3'
miRNA:   3'- -CGUCCCG-GC----------UGuCUAgGGG--------CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 8360 0.66 0.606239
Target:  5'- cGCGGaGGCgCGAgGcccccgcCCCCGGGGGGg -3'
miRNA:   3'- -CGUC-CCG-GCUgUcua----GGGGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 129468 0.66 0.606239
Target:  5'- gGCGGGacgagcCCGucCAGGUCCUCGGaGGGCa -3'
miRNA:   3'- -CGUCCc-----GGCu-GUCUAGGGGCCcCCUG- -5'
29449 5' -62.9 NC_006151.1 + 19092 0.66 0.605263
Target:  5'- uGCAGGGCuCGuacacguaguacaGCAGGcaCCgCGGGGGcGCg -3'
miRNA:   3'- -CGUCCCG-GC-------------UGUCUa-GGgGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 63789 0.66 0.600386
Target:  5'- gGCGGGGUCGGCcgucgccagcgccucGccGggCCCCGGGGcGCc -3'
miRNA:   3'- -CGUCCCGGCUG---------------U--CuaGGGGCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 17163 0.66 0.600386
Target:  5'- cGCAGaGGUCGGCGGcgCCCaGGauccacagguggaucGGGGCc -3'
miRNA:   3'- -CGUC-CCGGCUGUCuaGGGgCC---------------CCCUG- -5'
29449 5' -62.9 NC_006151.1 + 17420 0.66 0.596488
Target:  5'- aGCAGGGCCaGC-GAg--CCGGGGG-Cg -3'
miRNA:   3'- -CGUCCCGGcUGuCUaggGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 11032 0.66 0.596488
Target:  5'- cGCcGGGCCGGCcggccGGGggCCCGGccuGGACg -3'
miRNA:   3'- -CGuCCCGGCUG-----UCUagGGGCCc--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 27195 0.66 0.593567
Target:  5'- -gGGGGCCGcGCAGAaggCgCCGGGgccccgcgcgccguGGACg -3'
miRNA:   3'- cgUCCCGGC-UGUCUa--GgGGCCC--------------CCUG- -5'
29449 5' -62.9 NC_006151.1 + 110687 0.66 0.586762
Target:  5'- cGCGGcGGUgGGgAGAUCggggaaagaCCGGGGGAa -3'
miRNA:   3'- -CGUC-CCGgCUgUCUAGg--------GGCCCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.