miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 3' -56.6 NC_006151.1 + 54724 0.66 0.888565
Target:  5'- gGACGAGguGGcCGagcucgccgaggccaUGCGCG-GCGUCAc -3'
miRNA:   3'- -CUGCUCguCCaGC---------------ACGUGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 45174 0.66 0.888565
Target:  5'- gGACGGGguGG-CGUGCccgccaccacggacgGCGacggggUGCGCCGc -3'
miRNA:   3'- -CUGCUCguCCaGCACG---------------UGC------AUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 83168 0.66 0.885822
Target:  5'- --gGAGCucgGGGUCGUcGCGCGgGCGgCAg -3'
miRNA:   3'- cugCUCG---UCCAGCA-CGUGCaUGCgGU- -5'
29455 3' -56.6 NC_006151.1 + 21486 0.66 0.885822
Target:  5'- -uCGGGCAGG-CGgccgggggGCGCGgGCGUCAc -3'
miRNA:   3'- cuGCUCGUCCaGCa-------CGUGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 119849 0.66 0.885822
Target:  5'- -uCGAGCAGGcggcggaccgcuUCGUGCGC--ACGCUc -3'
miRNA:   3'- cuGCUCGUCC------------AGCACGUGcaUGCGGu -5'
29455 3' -56.6 NC_006151.1 + 69410 0.66 0.885822
Target:  5'- -gUGAGCAGGagcUCGUcGCGCcaggcgGCGCCGc -3'
miRNA:   3'- cuGCUCGUCC---AGCA-CGUGca----UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 130122 0.66 0.878808
Target:  5'- -cCGGGUucuGGcCGUGgGCGcGCGCCAg -3'
miRNA:   3'- cuGCUCGu--CCaGCACgUGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 131481 0.66 0.878808
Target:  5'- cACGAGCAcGUCcUGCAgGUGCaCCAg -3'
miRNA:   3'- cUGCUCGUcCAGcACGUgCAUGcGGU- -5'
29455 3' -56.6 NC_006151.1 + 84394 0.66 0.871575
Target:  5'- gGACGGGCGGGgagCGgguggGCGCGgugauaaggcgGCGCgCGg -3'
miRNA:   3'- -CUGCUCGUCCa--GCa----CGUGCa----------UGCG-GU- -5'
29455 3' -56.6 NC_006151.1 + 20999 0.66 0.871575
Target:  5'- gGACGGcGCugccGGcgaCGUGCACGcugACGCCGg -3'
miRNA:   3'- -CUGCU-CGu---CCa--GCACGUGCa--UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 59148 0.66 0.871575
Target:  5'- cGCGGGCGGGUCcagGCcgGCGUcGCGCa- -3'
miRNA:   3'- cUGCUCGUCCAGca-CG--UGCA-UGCGgu -5'
29455 3' -56.6 NC_006151.1 + 121914 0.66 0.864126
Target:  5'- cGCGGGCcgagGGGgaccgCGUGCugGggGCGCUg -3'
miRNA:   3'- cUGCUCG----UCCa----GCACGugCa-UGCGGu -5'
29455 3' -56.6 NC_006151.1 + 70483 0.66 0.864126
Target:  5'- cGACGAGCAcaugcgccgcguGGUgGcGCACaccgACGCCAc -3'
miRNA:   3'- -CUGCUCGU------------CCAgCaCGUGca--UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 98204 0.66 0.856467
Target:  5'- -cCGcGCGGGgucgaGUGCGCGgcgGCGCCc -3'
miRNA:   3'- cuGCuCGUCCag---CACGUGCa--UGCGGu -5'
29455 3' -56.6 NC_006151.1 + 98949 0.66 0.856467
Target:  5'- aGGCGGcGCGGGcCGUGgACGaggcgGCGCUg -3'
miRNA:   3'- -CUGCU-CGUCCaGCACgUGCa----UGCGGu -5'
29455 3' -56.6 NC_006151.1 + 75209 0.66 0.856467
Target:  5'- cGACGAGgGcGUCGgggcGCGCGUcggccacguagGCGCCGa -3'
miRNA:   3'- -CUGCUCgUcCAGCa---CGUGCA-----------UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 96102 0.66 0.856467
Target:  5'- cAUGAGCGGGguugCGgGCACGauCGCCu -3'
miRNA:   3'- cUGCUCGUCCa---GCaCGUGCauGCGGu -5'
29455 3' -56.6 NC_006151.1 + 73117 0.66 0.848606
Target:  5'- cGGCGGcgcgcccgcGCGGGU--UGCACGcGCGCCGa -3'
miRNA:   3'- -CUGCU---------CGUCCAgcACGUGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 91089 0.67 0.840547
Target:  5'- gGGCGAGCgcgaAGGUCGUcccgGC-CGcgGCGCCc -3'
miRNA:   3'- -CUGCUCG----UCCAGCA----CGuGCa-UGCGGu -5'
29455 3' -56.6 NC_006151.1 + 76684 0.67 0.840547
Target:  5'- uGGgGAGCAGGggggagaGUgGCGCGggcGCGCCGc -3'
miRNA:   3'- -CUgCUCGUCCag-----CA-CGUGCa--UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.