miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 57329 0.66 0.530833
Target:  5'- uGCGCgACGGGaagccgacaaaguccGCgGGGCccucgCGCCG-CCg -3'
miRNA:   3'- cCGCG-UGCCC---------------CGgCCCGa----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 75251 0.66 0.52716
Target:  5'- aGGCGCAcugcaccucCGcGGGCUccuGGCgcagCGCCG-CCa -3'
miRNA:   3'- -CCGCGU---------GC-CCCGGc--CCGa---GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 2393 0.66 0.52716
Target:  5'- aGGCcCuCGGGGCCgcGGaGCUCGgCGagGCCc -3'
miRNA:   3'- -CCGcGuGCCCCGG--CC-CGAGCgGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 26333 0.66 0.52716
Target:  5'- gGGCGaggcccgccuCACGGGGCggcggCGGGCcgCGUCGGg- -3'
miRNA:   3'- -CCGC----------GUGCCCCG-----GCCCGa-GCGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 84049 0.66 0.52716
Target:  5'- uGCgGCugGGGGUgGGGC-CGCaccuGugCu -3'
miRNA:   3'- cCG-CGugCCCCGgCCCGaGCGg---CugG- -5'
29458 3' -65.5 NC_006151.1 + 114433 0.66 0.52716
Target:  5'- cGCGUGCuGGaccGCCugcucgGGGCcugCGCCGGCCa -3'
miRNA:   3'- cCGCGUGcCC---CGG------CCCGa--GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 132642 0.66 0.52716
Target:  5'- cGGCGCcCGGacCUGGGC-CGCC-ACCu -3'
miRNA:   3'- -CCGCGuGCCccGGCCCGaGCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 141615 0.66 0.52716
Target:  5'- aGGCuGC-CGGGaUCGGGCgggUCGCUG-CCg -3'
miRNA:   3'- -CCG-CGuGCCCcGGCCCG---AGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 61350 0.66 0.52716
Target:  5'- uGCGCACcacGGCCGGGaggUCGCa-ACCg -3'
miRNA:   3'- cCGCGUGcc-CCGGCCCg--AGCGgcUGG- -5'
29458 3' -65.5 NC_006151.1 + 129175 0.66 0.52716
Target:  5'- cGuCGCGCaGGGCCGccacGGC-CGCCGucagcACCu -3'
miRNA:   3'- cC-GCGUGcCCCGGC----CCGaGCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 133162 0.66 0.52716
Target:  5'- cGGCGCggGCGuGGGCCucGGCcacgCGUcccaCGGCCg -3'
miRNA:   3'- -CCGCG--UGC-CCCGGc-CCGa---GCG----GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 131448 0.66 0.52716
Target:  5'- cGGCGgGCGGaaguCCGGGC--GCCGcACCu -3'
miRNA:   3'- -CCGCgUGCCcc--GGCCCGagCGGC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 128289 0.66 0.52716
Target:  5'- cGCGCGCaGGuaCGGGUccuccaucccgUCGUCGAgCCa -3'
miRNA:   3'- cCGCGUGcCCcgGCCCG-----------AGCGGCU-GG- -5'
29458 3' -65.5 NC_006151.1 + 102272 0.66 0.52716
Target:  5'- gGGCGCGCu--GCCGGaGCgCGgcCCGGCCg -3'
miRNA:   3'- -CCGCGUGcccCGGCC-CGaGC--GGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 86728 0.66 0.52716
Target:  5'- cGGCGCgccgccGCGaGGCCGGcGUgCGCgGACa -3'
miRNA:   3'- -CCGCG------UGCcCCGGCC-CGaGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 23404 0.66 0.518019
Target:  5'- cGCGC-CaGcGCUGGuGgUCGCCGGCCg -3'
miRNA:   3'- cCGCGuGcCcCGGCC-CgAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 14637 0.66 0.518019
Target:  5'- -cCGuCGgGGcGGCCGGGCUCGgguCCGGuuCCg -3'
miRNA:   3'- ccGC-GUgCC-CCGGCCCGAGC---GGCU--GG- -5'
29458 3' -65.5 NC_006151.1 + 137931 0.66 0.518019
Target:  5'- gGGCGCcugcuccccuuUGGGGacgcgcccCCGGGCuUCGaCGACCc -3'
miRNA:   3'- -CCGCGu----------GCCCC--------GGCCCG-AGCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 129339 0.66 0.518019
Target:  5'- cGGCcC-CGGGGCgGccGGCgCGCCGAUa -3'
miRNA:   3'- -CCGcGuGCCCCGgC--CCGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 127844 0.66 0.518019
Target:  5'- cGGCGuCGCGGcugcGCCggaGGGggCGCCGcCCg -3'
miRNA:   3'- -CCGC-GUGCCc---CGG---CCCgaGCGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.